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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Cotton_A_16267_BGI-A2_v1.0 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family |
AP2 |
Protein Properties |
Length: 370aa MW: 41876.3 Da PI: 8.2907 |
Description |
AP2 family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Cotton_A_16267_BGI-A2_v1.0 | genome | BGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | AP2 | 34.9 | 4e-11 | 49 | 106 | 1 | 55 |
AP2 1 sgykGV.rwdkkrgrWvAeIrd.pseng.krkrfslgkfgtaeeAakaaiaarkkleg 55
s y+GV r+++++gr++A+++d ++n ++k+ + g ++ +e Aa a++ a++k++g
Cotton_A_16267_BGI-A2_v1.0 49 SIYRGVtRQHRWTGRFEAHLWDkNCWNEsQNKKGRQGAYDDEESAAHAYDLAALKYWG 106
57********************99998898888888********************98 PP
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2 | AP2 | 51.2 | 3.2e-16 | 149 | 200 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55
s+y+GV +++ +grW+A+I + g +k+ +lg++ t eeAa a++ a+ +++g
Cotton_A_16267_BGI-A2_v1.0 149 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYATQEEAATAYDMAAIEYRG 200
89****99**********99966...3.6*************************98 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0003677 | Molecular Function | DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 370 aa
Download sequence Send
to blast |
MTKLSQVNQK NSAQSDSVSN NISTSNDVTK VKKRTRRSFP RDSPPQRSSI YRGVTRQHRW 60 TGRFEAHLWD KNCWNESQNK KGRQGAYDDE ESAAHAYDLA ALKYWGQDTI LNFPVSTYQK 120 ELKEMENQSR EEYIGSLRRK SSGFSRGVSK YRGVARHHHN GRWEARIGRV FGNKYLYLGT 180 YATQEEAATA YDMAAIEYRG LNAVTNFDLS RYIKWLKPNQ TNPTTPNSNI DTTTASKLAN 240 PSHHQQHNPG FFTTTDDDNR QPQGTGVGIP SETLLTQPRP GNATSALGLL LQSSKFKEMM 300 EMTSAVVVDQ CQFTPPPSTT SEPTRYSFPE NVETYLECQD SSSLADEDRD IIFGELNSFM 360 APMFSCDINA
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Functional Description ? help
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Source |
Description |
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |