PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_16113_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family GRAS
Protein Properties Length: 493aa    MW: 54598.5 Da    PI: 5.6551
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_16113_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS369.44.9e-1131084861374
                        GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykal.ppsetsekn...sseel 78 
                                 +v+lL+++Aea+   +++la+ +L rl+el+sp++ ++m+RlaayfteAL++ l +s+ + +k + +  ++++++   +++ l
  Cotton_A_16113_BGI-A2_v1.0 108 MVHLLMAAAEALMGANKSLARVILVRLKELVSPSDgTNMERLAAYFTEALQSLLEGSGGGHSKHFiTNGPQHHRDkhrEADML 190
                                 689***************************888766********************998888877433333333346799*** PP

                        GRAS  79 aalklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp..slRiTgvgspesg..skee 157
                                 aa++l++++sP++kf+h+taNqaIleav +++r+Hi+D+di++G+QW++L+qaL sR+egpp  +lRiT++++ ++g  s  +
  Cotton_A_16113_BGI-A2_v1.0 191 AAFQLLQDMSPYVKFGHFTANQAILEAVTHDRRIHIVDYDIMEGIQWASLMQALVSRKEGPPtpHLRITALSRGSNGwrSIGT 273
                                 **********************************************************887666*********99999999** PP

                        GRAS 158 leetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvv 240
                                 ++etg+rL+ fA+++g pf+f+    ++ e++++++L++ +gEal++n++l+l ++ +++ s+     ++L+  k+l+P++v+
  Cotton_A_16113_BGI-A2_v1.0 274 IQETGRRLTAFASSIGQPFSFHQCRLDSDETFRPSALKLVRGEALIINCMLNLPHFSHRPPSSVA---SFLSGAKTLNPRLVT 353
                                 ***********************9999*****************************988888877...9************** PP

                        GRAS 241 vveqeadh.nsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleea 322
                                 vve+ea   +++ F+ rf+++l++ysa+fdslea++p + ++r+ vEr++lg++i   +a+  ++r+e  e+ ++W+e+l+++
  Cotton_A_16113_BGI-A2_v1.0 354 VVEEEAGPiGDGGFMGRFMDSLHHYSAVFDSLEAGFPMQCRARALVERVILGPQIAGSLAQIYRNRNE--EESGRWSEWLDTM 434
                                 *****9988******************************************************99766..556********** PP

                        GRAS 323 GFkpvplsekaakqaklllrkvksdgyrveee.sgslvlgWkdrpLvsvSaWr 374
                                 GF+pv++s  + +qaklll  ++ dgyrvee  ++ +vl Wk+r+L+s+S W+
  Cotton_A_16113_BGI-A2_v1.0 435 GFNPVSISFANHCQAKLLLGLFN-DGYRVEELaNNRVVLDWKSRRLLSASIWT 486
                                 ***********************.******98477788**************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098555.72582466IPR005202Transcription factor GRAS
PfamPF035141.7E-110108486IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 493 aa     Download sequence    Send to blast
MAMAIDNAFE VDFCSYSTST TTTTTAGEDP ACTWNHWGSP VVDWGSLSSE RDEFQDLIES  60
MMDDGAGFEL TRLGHDHETS NSVSVSVSTD TMVAYEETNG EDFKGLRMVH LLMAAAEALM  120
GANKSLARVI LVRLKELVSP SDGTNMERLA AYFTEALQSL LEGSGGGHSK HFITNGPQHH  180
RDKHREADML AAFQLLQDMS PYVKFGHFTA NQAILEAVTH DRRIHIVDYD IMEGIQWASL  240
MQALVSRKEG PPTPHLRITA LSRGSNGWRS IGTIQETGRR LTAFASSIGQ PFSFHQCRLD  300
SDETFRPSAL KLVRGEALII NCMLNLPHFS HRPPSSVASF LSGAKTLNPR LVTVVEEEAG  360
PIGDGGFMGR FMDSLHHYSA VFDSLEAGFP MQCRARALVE RVILGPQIAG SLAQIYRNRN  420
EEESGRWSEW LDTMGFNPVS ISFANHCQAK LLLGLFNDGY RVEELANNRV VLDWKSRRLL  480
SASIWTSPPD SDL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A3e-5810148612379Protein SCARECROW
5b3h_A3e-5810148611378Protein SCARECROW
5b3h_D3e-5810148611378Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator essential for Nod-factor-induced gene expression. Acts downstream of calcium spiking and DMI3, a calcium/calmodulin-dependent protein kinase (CCaMK). {ECO:0000269|PubMed:15961668}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced 24 hours after treatment with Nod factor or Sinorhizobium meliloti. {ECO:0000269|PubMed:15961668}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017606087.10.0PREDICTED: nodulation-signaling pathway 2 protein
SwissprotQ5NE240.0NSP2_MEDTR; Nodulation-signaling pathway 2 protein
TrEMBLA0A2P5S3C80.0A0A2P5S3C8_GOSBA; Uncharacterized protein
STRINGGorai.009G244200.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM99142736
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08250.11e-164GRAS family protein
Publications ? help Back to Top
  1. Tang H, et al.
    An improved genome release (version Mt4.0) for the model legume Medicago truncatula.
    BMC Genomics, 2014. 15: p. 312
    [PMID:24767513]