![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Cotton_A_16049_BGI-A2_v1.0 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
|
||||||||
Family | GATA | ||||||||
Protein Properties | Length: 584aa MW: 64404.6 Da PI: 7.7808 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 35.4 | 1.5e-11 | 69 | 96 | 8 | 35 |
GATA 8 kTplWRrgpdgnktLCnaCGlyyrkkgl 35 TplWR+gp ++ LCnaCG ++r kg+ Cotton_A_16049_BGI-A2_v1.0 69 GTPLWRNGPPEKPVLCNACGSRWRTKGT 96 4********88888***********997 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00401 | 0.0095 | 66 | 110 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 3.37E-6 | 68 | 99 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 5.6E-8 | 68 | 96 | IPR013088 | Zinc finger, NHR/GATA-type |
Pfam | PF00320 | 2.5E-9 | 69 | 96 | IPR000679 | Zinc finger, GATA-type |
CDD | cd00202 | 3.40E-10 | 70 | 110 | No hit | No description |
Pfam | PF13919 | 6.1E-8 | 328 | 416 | IPR028020 | ASX homology domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 584 aa Download sequence Send to blast |
MGKQGPCYHC GVTTGRVPNN GRHCPFVCVL GGGFLLYSGK SQCALRGLVH RAGSASVGGD 60 MNWKTQRRGT PLWRNGPPEK PVLCNACGSR WRTKGTLAKY TPLHARAEPE DLRASRVKSI 120 SINKDREAKR KPNHDIAIVS PDYNLGFRKF VDEDTSNRSS SGSAISNSES CAQFGSADVS 180 DLTGPSQSNV WDSMVPSKKR TCVNRPKPSP VEKLTKDLCT ILHEQQSSYF SVSSNDDLLL 240 ESETPMVSVE IGHGGILIKH PSSIAREEES EASSLSFENK QYSMNEAYSH SSSFLAYNDS 300 KGVKYLGHGI EKAKNPAGQG MQHEQLKRDK AQHEKLLILE SRNLPLCNID LSDIINFEEF 360 VKHLTKDEQQ HLLQYLPPLD IAKLPESLKS MFESPQFEDN LCYFQQLLEE GVFNISVPGV 420 NAEDCKTLKR LALINLTKSH WVECHHGLKK CSSVGRSVIT RGPSVVPSNN SATVKRSRDG 480 QIPEARTLMS PKRVIMKATH ENKELRDNES SCFSPRSLFA LPPDGSSPVL DSLHFVDECS 540 DQDLLLDVPS NGSFPQAELL CPTSSFGQQA STSSNSPHPH LVHP |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | JX609297 | 8e-76 | JX609297.1 Gossypium hirsutum clone NBRI_GE50488 microsatellite sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_017640832.1 | 0.0 | PREDICTED: GATA transcription factor 26-like | ||||
Swissprot | Q8W4H1 | 1e-135 | GAT26_ARATH; GATA transcription factor 26 | ||||
TrEMBL | A0A0B0MH26 | 0.0 | A0A0B0MH26_GOSAR; GATA transcription factor 26-like protein | ||||
STRING | Gorai.003G177500.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1606 | 27 | 85 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G17570.2 | 1e-135 | GATA transcription factor 26 |