PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_15693_BGI-A2_v1.0 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | WRKY | ||||||||
Protein Properties | Length: 506aa MW: 54526.6 Da PI: 8.4128 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 97.4 | 9.2e-31 | 270 | 328 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +Dg++WrKYGqK kg+++pr+YYrCt+a gCpv+k+v+r+aed++++++tYeg+Hnh+ Cotton_A_15693_BGI-A2_v1.0 270 SDGCQWRKYGQKLAKGNPCPRAYYRCTMAvGCPVRKQVQRCAEDKSILITTYEGNHNHP 328 7*********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.0E-32 | 254 | 330 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 9.15E-28 | 263 | 330 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 29.918 | 264 | 330 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.2E-36 | 269 | 329 | IPR003657 | WRKY domain |
Pfam | PF03106 | 5.8E-27 | 271 | 328 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 506 aa Download sequence Send to blast |
MEKQLRRELR FLHSGDCPTQ DSGEPDGALD DSGDHVKPLI KEMDFFPNHN QSHDCHQGRK 60 IDNNNNSPLS SLLDSDVNIG LNLLSSSSGV SRIANEEKPK AEISHVKIAL ERLNEENRRL 120 RCTLGQITKS YKELQGQLFM AVQKLALGNK TEKKDAVNGT SSPIMSVPQF MDPRPSAALD 180 VNEPSASNDR TQDLSASPGK NMEVVSKEGE HQIPGKHASV EDGSDKTSQS WRPTKCLKLD 240 HSNKEEQVSE VPFRKARVSI RARSEAPLIS DGCQWRKYGQ KLAKGNPCPR AYYRCTMAVG 300 CPVRKQVQRC AEDKSILITT YEGNHNHPLP PAATALANTT SAAAAMLLSG STTSKDGLSL 360 PSFGYFPSLP NASTMAPSAA PFPIVTLDLT QGPNAVPFLW PPPSAATFPL PVHGYPQILG 420 HSMLAPPKLS AVSAMQLWQL PVSMVETVTA AIASDPNFSR ALAAAISKII GAPKSNNGGN 480 NNSSNRVATL PGSPQLPQSC TTFSAN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 1e-21 | 256 | 332 | 1 | 76 | WRKY transcription factor 1 |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KF669825 | 0.0 | KF669825.1 Gossypium hirsutum WRKY transcription factor 51 (WRKY51) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001314146.1 | 0.0 | probable WRKY transcription factor 47 | ||||
Refseq | XP_017630074.1 | 0.0 | PREDICTED: probable WRKY transcription factor 47 | ||||
TrEMBL | A0A068LIA5 | 0.0 | A0A068LIA5_GOSHI; WRKY transcription factor 51 | ||||
STRING | Gorai.007G117200.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM7156 | 27 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G01720.1 | 7e-65 | WRKY family protein |