PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_15656_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 425aa    MW: 48472.9 Da    PI: 6.5667
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_15656_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH43.55.9e-14239290155
                                 CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                         HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                 +r++h ++Er+RR+++N+ ++ Lr+l+P++   + ++ + a+i   A++++k+L+
  Cotton_A_15656_BGI-A2_v1.0 239 QRMTHIAVERNRRRQMNDYLNSLRSLMPPC---YIQRGDQASIIAGAIDFVKELE 290
                                 79****************************...*******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000833.13E-12237294No hitNo description
PROSITE profilePS5088816.126238289IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.07E-17238306IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.7E-11239290IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.8E-15239302IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.8E-11244295IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 425 aa     Download sequence    Send to blast
MPPGCVAEDV QNSFRLKMDK RQFIWIRYFK TSSNEIGAHN SEASTLSLLL VFLGEHLEVE  60
CLEQGFISCE RLKLGEEEEE AHFSIPSFEE KMPFLQMLQS VESPQLFAFK EPNFQTLLRL  120
QHMKKPWELN NNPFIPEMET QVQGLELESC VTHETVLDLH SPVKSETKEL KKSPPSSSCV  180
EVLSSRSNQH QPKSDNCSRE PNLGSSPQKI FTKSPPITRE RRKRKRTKAA KNKEEVESQR  240
MTHIAVERNR RRQMNDYLNS LRSLMPPCYI QRGDQASIIA GAIDFVKELE QLLQSLEAQK  300
RTRKVEESNN SMSKPAMETH QQEYENGSED GHCGEEVKAE SKTGAAEVEV NVIHNHVNLK  360
IQCSRRAGQL IHAIVTLETL RLTVLHLNIT TSQASVLYSF NLKMEDDSAL RSADEITAAV  420
HQIFS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1220225RRKRKR
2239250RMTHIAVERNRR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017631753.10.0PREDICTED: transcription factor bHLH67-like isoform X1
TrEMBLA0A1U8L8920.0A0A1U8L892_GOSHI; transcription factor bHLH57-like isoform X2
STRINGGorai.007G113200.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM31192666
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46810.17e-61bHLH family protein