PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_15346_BGI-A2_v1.0

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bHLH

Protein Properties

Length: 360aa MW: 39647.2 Da PI: 6.0652

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_15346_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	26.4	1.3e-08	203	250	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++iN ++ L+el+P + +k a +L + +++++sLq Cotton_A_15346_BGI-A2_v1.0 203 SHSLAERARREKINARMKLLQELVPGC----NKISGTALVLDEIINHVQSLQ 250 8*************************9....888999999999999999998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	3.79E-15	197	268	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.81E-8	197	254	No hit	No description
Gene3D	G3DSA:4.10.280.10	1.0E-14	199	267	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	14.519	199	249	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	4.2E-6	203	250	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.9E-8	205	255	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 360 aa Download sequence Send to blast
MESNAGATET RSNVTVSDGG EVAAFESLQF TDEIHRLISA PATDNASSFT ALLELPATQV 60 VELLHSPESV KLIVASAPNV EDFKGSFHFP SNTGLIQKDA RFSVFSGEGN NKNDKSNSPE 120 MTSKNSSANL EKAVKSEPAE TASSLPLVSD PTVENRNIKR KDREKKVKGS TKKSKPATNE 180 SLEDAEKLPY VHVRARRGQA TDSHSLAERA RREKINARMK LLQELVPGCN KISGTALVLD 240 EIINHVQSLQ RQVEFLSMSL AAVNPRIDFN LDSSFTSESG STMDGGNFPS LVTPLMWPDV 300 QVNGYRQQFQ HQWHFDTLKQ PIWGREEVCN NYVTPENSLL SYDSSANSAT LHANQLKMEL

Sequence ? help Back to Top

Protein Sequence Length: 360 aa Download sequence Send to blast

MESNAGATET RSNVTVSDGG EVAAFESLQF TDEIHRLISA PATDNASSFT ALLELPATQV  60
VELLHSPESV KLIVASAPNV EDFKGSFHFP SNTGLIQKDA RFSVFSGEGN NKNDKSNSPE  120
MTSKNSSANL EKAVKSEPAE TASSLPLVSD PTVENRNIKR KDREKKVKGS TKKSKPATNE  180
SLEDAEKLPY VHVRARRGQA TDSHSLAERA RREKINARMK LLQELVPGCN KISGTALVLD  240
EIINHVQSLQ RQVEFLSMSL AAVNPRIDFN LDSSFTSESG STMDGGNFPS LVTPLMWPDV  300
QVNGYRQQFQ HQWHFDTLKQ PIWGREEVCN NYVTPENSLL SYDSSANSAT LHANQLKMEL

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017623456.1	0.0	PREDICTED: transcription factor bHLH48-like isoform X2
Swissprot	Q3EAI1	2e-94	BH060_ARATH; Transcription factor bHLH60
TrEMBL	A0A1U8KZD1	0.0	A0A1U8KZD1_GOSHI; transcription factor bHLH48-like isoform X2
STRING	Gorai.002G229100.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2576	27	71

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57800.2	1e-106	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Li Y,Wang H,Li X,Liang G,Yu D Two DELLA-interacting proteins bHLH48 and bHLH60 regulate flowering under long-day conditions in Arabidopsis thaliana. J. Exp. Bot., 2017. 68(11): p. 2757-2767 [PMID:28591805]