PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_15315_BGI-A2_v1.0

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

Trihelix

Protein Properties

Length: 442aa MW: 50948 Da PI: 6.8504

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_15315_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	81.7	1e-25	117	213	1	85
trihelix 1 rWtkqevlaLiearremeerlrrgk...........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr. 71 +Wt+++v++Li+a+++++e++ ++ +kk++W++vsk+++erg+++sp+qC++k+++lnkrykk++++ +++ Cotton_A_15315_BGI-A2_v1.0 117 KWTDKMVRLLITAVSYIGEDMAGDCgggmrrkfavlQKKGKWKSVSKVIAERGYHVSPQQCEDKFNDLNKRYKKLNDMLGRGt 199 7*******************98888889999999********************************************5 PP trihelix 72 tsessstcpyfdql 85 +++++++ +++d + Cotton_A_15315_BGI-A2_v1.0 200 SCQVVENPALLDVI 213 69999888887765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	4.8E-23	115	240	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 442 aa Download sequence Send to blast
MEGNLSRGMI PGGSSFGGLD LQGSMMVHHH AQNPHNINHH HHHPNPRRGT SAHPGFRLTA 60 GTMQNSDQPI SMIDYNKMEI GKCSVSDEDE PSFAEEGVDG HNDGNKGKKG SPWQRVKWTD 120 KMVRLLITAV SYIGEDMAGD CGGGMRRKFA VLQKKGKWKS VSKVIAERGY HVSPQQCEDK 180 FNDLNKRYKK LNDMLGRGTS CQVVENPALL DVIDYLTEKE KDDVRKILSS KHLFYEEMCS 240 YHNGNRLHLP HDLKLQRSLQ LALRRRDENE NDNVRRHQHD DLDDDDHDME TDDHDELEEN 300 HASHGDNRVI FGAPVGSTKR SRQSQVHEDA CFQKFLNSQD CNKSSFSCPP VAQADTNQVL 360 PDYSRAAWLQ KQWIESRSLQ LEEQKLQIQV EMLELEKQRF KWQRFSKKSD RELEKIRMEN 420 ERMKLENEQM ALELKRKELA AD

Sequence ? help Back to Top

Protein Sequence Length: 442 aa Download sequence Send to blast

MEGNLSRGMI PGGSSFGGLD LQGSMMVHHH AQNPHNINHH HHHPNPRRGT SAHPGFRLTA  60
GTMQNSDQPI SMIDYNKMEI GKCSVSDEDE PSFAEEGVDG HNDGNKGKKG SPWQRVKWTD  120
KMVRLLITAV SYIGEDMAGD CGGGMRRKFA VLQKKGKWKS VSKVIAERGY HVSPQQCEDK  180
FNDLNKRYKK LNDMLGRGTS CQVVENPALL DVIDYLTEKE KDDVRKILSS KHLFYEEMCS  240
YHNGNRLHLP HDLKLQRSLQ LALRRRDENE NDNVRRHQHD DLDDDDHDME TDDHDELEEN  300
HASHGDNRVI FGAPVGSTKR SRQSQVHEDA CFQKFLNSQD CNKSSFSCPP VAQADTNQVL  360
PDYSRAAWLQ KQWIESRSLQ LEEQKLQIQV EMLELEKQRF KWQRFSKKSD RELEKIRMEN  420
ERMKLENEQM ALELKRKELA AD

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017617535.1	0.0	PREDICTED: uncharacterized protein LOC108462040
TrEMBL	A0A1U8L3B8	0.0	A0A1U8L3B8_GOSHI; uncharacterized protein LOC107922344
STRING	Gorai.002G231400.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5042	27	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G21200.1	1e-153	sequence-specific DNA binding transcription factors