PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_15314_BGI-A2_v1.0

Common Name

F383_01517

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

Trihelix

Protein Properties

Length: 492aa MW: 55992 Da PI: 9.0462

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_15314_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	91.5	8.8e-29	59	143	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfd 83 rW++qe+laL+++r++m+ ++r+++ k+plWeevs+k++e g++rs+k+Ckek+en+ k++k++k+g++++ + +t+++ d Cotton_A_15314_BGI-A2_v1.0 59 RWPRQETLALLKIRSDMDLTFREASVKGPLWEEVSRKLAELGYHRSAKKCKEKFENVYKYHKRTKDGRSGK--ADGKTYRFCD 139 8******************************************************************96..56668*** PP trihelix 84 qlea 87 qlea Cotton_A_15314_BGI-A2_v1.0 140 QLEA 143 *985 PP
2	trihelix	100.2	1.7e-31	316	400	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfd 83 rW+k e+ aLi++r+++++++++++ k+plWee+s+ m++ g++r++k+Ckekwen+nk++kk+ke++k+r + +s+tcpyf+ Cotton_A_15314_BGI-A2_v1.0 316 RWPKVEIEALIKIRTSLDSKYQDNSPKGPLWEEISNEMKKLGYNRNAKRCKEKWENINKYFKKVKESNKRR-PVDSKTCPYFH 397 8******************************************************************97.9999***** PP trihelix 84 qle 86 l+ Cotton_A_15314_BGI-A2_v1.0 398 LLD 400 986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00717	0.0015	56	118	IPR001005	SANT/Myb domain
Pfam	PF13837	1.1E-18	58	143	No hit	No description
PROSITE profile	PS50090	6.911	58	116	IPR017877	Myb-like domain
CDD	cd12203	4.60E-23	58	123	No hit	No description
SMART	SM00717	0.0011	313	375	IPR001005	SANT/Myb domain
Pfam	PF13837	9.1E-22	315	400	No hit	No description
CDD	cd12203	3.04E-26	315	380	No hit	No description
PROSITE profile	PS50090	7.131	315	373	IPR017877	Myb-like domain

Sequence ? help Back to Top
Protein Sequence Length: 492 aa Download sequence Send to blast
MLGGGGTTAS VSSVGGRNGR NEAAAAVAVF DTNDGNNNNT GEDDRSKVDE GDRSFGGNRW 60 PRQETLALLK IRSDMDLTFR EASVKGPLWE EVSRKLAELG YHRSAKKCKE KFENVYKYHK 120 RTKDGRSGKA DGKTYRFCDQ LEAFQNQPSI QWPPRPPMTA AATINQSISA VQMSNSISSS 180 TSSDLELQGR KKRKRKWMDF FERLMKEVIQ KQQVMQKTFL EAIEKHERER IVRDEAWKVQ 240 EMSRLNTERE ILAQERSIAA AKDAAIMAFL QKLSEKQNLG QSQNGPLPPP AVVPAAVAPP 300 PDNGNQIQTH TSSSSRWPKV EIEALIKIRT SLDSKYQDNS PKGPLWEEIS NEMKKLGYNR 360 NAKRCKEKWE NINKYFKKVK ESNKRRPVDS KTCPYFHLLD VLYREKNKHD CSSKSNPLMV 420 RPEKQWPPPL EPHQQHHDTI MEDMMESDQN DDEEEDEGGS YELVASKPVS MGTAEGCQKE 480 TTEISFAHMI VR

Sequence ? help Back to Top

Protein Sequence Length: 492 aa Download sequence Send to blast

MLGGGGTTAS VSSVGGRNGR NEAAAAVAVF DTNDGNNNNT GEDDRSKVDE GDRSFGGNRW  60
PRQETLALLK IRSDMDLTFR EASVKGPLWE EVSRKLAELG YHRSAKKCKE KFENVYKYHK  120
RTKDGRSGKA DGKTYRFCDQ LEAFQNQPSI QWPPRPPMTA AATINQSISA VQMSNSISSS  180
TSSDLELQGR KKRKRKWMDF FERLMKEVIQ KQQVMQKTFL EAIEKHERER IVRDEAWKVQ  240
EMSRLNTERE ILAQERSIAA AKDAAIMAFL QKLSEKQNLG QSQNGPLPPP AVVPAAVAPP  300
PDNGNQIQTH TSSSSRWPKV EIEALIKIRT SLDSKYQDNS PKGPLWEEIS NEMKKLGYNR  360
NAKRCKEKWE NINKYFKKVK ESNKRRPVDS KTCPYFHLLD VLYREKNKHD CSSKSNPLMV  420
RPEKQWPPPL EPHQQHHDTI MEDMMESDQN DDEEEDEGGS YELVASKPVS MGTAEGCQKE  480
TTEISFAHMI VR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	189	194	RKKRKR
2	189	195	RKKRKRK
3	190	195	KKRKRK

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that binds specific DNA sequence. {ECO:0000250}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JQ013092	0.0	JQ013092.1 Gossypium hirsutum trihelix transcription factor (GT7) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017618378.1	0.0	PREDICTED: trihelix transcription factor GT-2-like
Swissprot	Q39117	2e-77	TGT2_ARATH; Trihelix transcription factor GT-2
TrEMBL	A0A0B0PJ77	0.0	A0A0B0PJ77_GOSAR; Trihelix transcription factor GT-2-like protein
STRING	Gorai.002G231500.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4849	25	53

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76890.2	2e-70	Trihelix family protein