PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_15200_BGI-A2_v1.0

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bHLH

Protein Properties

Length: 303aa MW: 33971.9 Da PI: 7.2829

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_15200_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	29.5	1.3e-09	164	211	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq Cotton_A_15200_BGI-A2_v1.0 164 SHSLAERVRREKISERMKLLQDLVPGC----NKVIGKAVMLDEIIKYVQSLQ 211 8***********************9....677***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	9.24E-10	158	215	No hit	No description
SuperFamily	SSF47459	7.59E-17	158	228	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.294	160	210	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	3.6E-17	161	228	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.1E-6	164	211	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.2E-10	166	216	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 303 aa Download sequence Send to blast
MDNQFSLNAP PFHVEPSLSA SYYLSSAMDI HATELNCSQH CEQPTDYYGL HFHFPLSSMP 60 SQVGGFQGNN NNISPLQGRS KFVTSQNESL LNPNADLEAS KYWNSRKRTK TVETSASPTI 120 AAKGSERNQE SNEKQSNTNT NTKPLEPPKD YIHVRARRGE ATDSHSLAER VRREKISERM 180 KLLQDLVPGC NKVIGKAVML DEIIKYVQSL QRQVEFLSMK LASVNSRLDF KLDSVMSEDI 240 FQSNNNFANP ISTIDSWASA IFGQQQQNLA LHSNVSNGTM TQCSVKPMDT AIWPQLQHPF 300 TSN

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX616874	2e-84	JX616874.1 Gossypium hirsutum clone NBRI_GE61821 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017645876.1	0.0	PREDICTED: transcription factor bHLH62-like
Swissprot	Q9SRT2	1e-60	BH062_ARATH; Transcription factor bHLH62
TrEMBL	A0A2P5YSM1	0.0	A0A2P5YSM1_GOSBA; Uncharacterized protein
STRING	Gorai.001G230000.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM24586	3	4

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07340.1	8e-63	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]