PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_14914_BGI-A2_v1.0

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bHLH

Protein Properties

Length: 235aa MW: 27305.2 Da PI: 6.8828

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_14914_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	31.4	3.5e-10	28	75	5	54
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-.STCHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskK.lsKaeiLekAveYIksL 54 +++E++RR+++++ ++ L +llP++ +sk ls + +Av+YI sL Cotton_A_14914_BGI-A2_v1.0 28 RKIIEKNRRNHMKNLYASLNSLLPHR---NSKElLSLPDQIDEAVNYITSL 75 589********************9...88888************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	1.3E-10	23	94	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	11.128	23	75	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.6E-9	27	95	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.2E-6	28	75	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 235 aa Download sequence Send to blast
MELQMEYLAV DKQIEKQRAR CSSAKIERKI IEKNRRNHMK NLYASLNSLL PHRNSKELLS 60 LPDQIDEAVN YITSLKTRMN ESREKKESLM RRKRSYTCAD TITSETTARS KSPEIKMNEN 120 GSAMEVVLTT GKDSQFMFYE MIYILHQHGA QVLNASFSIL GNTVFHIVHA EIGAFVGAQI 180 IKDKLNKLVK GSSCEEELQQ ELWDYQIHPE TWDLNYEIYP ETWDFPIMLG STYMP

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017614638.1	1e-178	PREDICTED: transcription factor bHLH118-like
TrEMBL	A0A2P5X6C7	1e-167	A0A2P5X6C7_GOSBA; Uncharacterized protein
STRING	Gorai.012G127900.1	1e-165	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1278	25	92

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G20970.1	1e-31	bHLH family protein