PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

ERF

Protein Properties

Length: 156aa MW: 17435.6 Da PI: 10.0625

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_14881_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	55.9	1e-17	30	79	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+G+r +k +g+WvAeIr+p +kr r++lg++ t+ Aa+a++ a +l+g Cotton_A_14881_BGI-A2_v1.0 30 PYRGIRMRK-WGKWVAEIREP---NKRSRIWLGSYTTPVAAARAYDTAVFYLRG 79 69***99.******9...336***********************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF54171	3.47E-21	30	88	IPR016177	DNA-binding domain
PROSITE profile	PS51032	22.128	30	87	IPR001471	AP2/ERF domain
SMART	SM00380	7.3E-36	30	93	IPR001471	AP2/ERF domain
Pfam	PF00847	1.0E-10	31	79	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	2.5E-30	31	88	IPR001471	AP2/ERF domain
PRINTS	PR00367	7.0E-12	31	42	IPR001471	AP2/ERF domain
CDD	cd00018	2.92E-27	31	89	No hit	No description
PRINTS	PR00367	7.0E-12	69	89	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009409	Biological Process	response to cold
GO:0009414	Biological Process	response to water deprivation
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 156 aa Download sequence Send to blast
MEGDCCSSST SSSTSGEKPK AERTQQKEKP YRGIRMRKWG KWVAEIREPN KRSRIWLGSY 60 TTPVAAARAY DTAVFYLRGP SARLNFPDLI EKDNKLRDIS AASIRKKAAE VGAKVDALQT 120 SSVYHHGGSS SDSPNNTRRV LLKPDLNKYP EISDED

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2gcc_A	6e-16	27	87	2	63	ATERF1
3gcc_A	6e-16	27	87	2	63	ATERF1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00188	DAP	Transfer from AT1G46768	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016722026.1	1e-112	PREDICTED: ethylene-responsive transcription factor RAP2-1-like isoform X2
Refseq	XP_017644760.1	1e-112	PREDICTED: ethylene-responsive transcription factor RAP2-1-like isoform X2
Swissprot	O22174	2e-49	ERF08_ARATH; Ethylene-responsive transcription factor ERF008
TrEMBL	A0A1U8M5D3	1e-111	A0A1U8M5D3_GOSHI; ethylene-responsive transcription factor RAP2-1-like isoform X2
STRING	Gorai.010G021900.1	1e-109	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM10	28	1650

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G23340.1	2e-51	DREB and EAR motif protein 3

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Sazegari S,Niazi A,Ahmadi FS A study on the regulatory network with promoter analysis for Arabidopsis DREB-genes. Bioinformation, 2015. 11(2): p. 101-6 [PMID:25848171]