PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_14790_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 705aa    MW: 75837.4 Da    PI: 6.3983
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_14790_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH50.53.8e-16442488455
                                 HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                         HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                  hn  ErrRRdriN+++  L+el+P++      K++Ka++L +A+eY+k Lq
  Cotton_A_14790_BGI-A2_v1.0 442 VHNLSERRRRDRINEKMRALQELIPNC-----NKVDKASMLDEAIEYLKTLQ 488
                                 5*************************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088817.981438487IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.49E-20441511IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.5E-20441497IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.49E-17441492No hitNo description
PfamPF000101.3E-13442488IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.7E-17444493IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009704Biological Processde-etiolation
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0010017Biological Processred or far-red light signaling pathway
GO:0031539Biological Processpositive regulation of anthocyanin metabolic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 705 aa     Download sequence    Send to blast
MPLSELYRMA RGKLDSSQDK NPSSSTDPSI VPEDDFVELV WENGQISMQG QSSIARKVPV  60
CNSLQSHSFK IGDKYIGNGG NSSKMGKFGV VNAVSSEVPM SAPSHDDDVV PWLKYSENEC  120
CDMLPGLSGL CTNNIPTDSS LASFNQRRQS ISDSFSGSLN AAADFKQGKL AKVPKPADDE  180
ARLRSGTSES PQLCQVSSSY LGSRNLESIG NKPSHAFFRD TMGVQPSDET LRCVKMQKQD  240
KVAPCNNTVL MNFSHFSRPA ALVKASLQNI GAMARIESKE TGFAASTRGP VGSKAIDSNI  300
KLQKETFSHC HSSIVPMKTD IKQSEAKSLD EPVAAEPNNA NCEEYVPKSD KISSQVIGEN  360
ASNCLPESGK AVESVLAASV CCENNVERAS DDPVVNNLKR KNHDNEEFEC PSEDAEEESV  420
GVKKAVPARG GKGFKRSGAA EVHNLSERRR RDRINEKMRA LQELIPNCNK VDKASMLDEA  480
IEYLKTLQLQ VQIMSMRAGL YVPPMMLPTG MQHMHATQMA YFSSMGFGMG LGMGFGMPFP  540
ETNTVASACP MVQVPPVCGA PFSGPGPHLS GSTAFHEMPG ANLRLYGLHG QGLPMSVPGA  600
PLFPIPGGHL MKSAIGLSAC GLGGPMDNMD SATASSSKDL IQNINSQVAQ NTNINSSMNQ  660
TSTQYRTANE SFQQPAEVQE NGRASEITGS VPFRSTDGDK KLPDR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1446451ERRRRD
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00081ChIP-seqTransfer from AT1G09530Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017638127.10.0PREDICTED: transcription factor PIF3-like isoform X1
TrEMBLA0A2P5Y4250.0A0A2P5Y425_GOSBA; Uncharacterized protein
STRINGGorai.007G309400.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM76652739
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.27e-75phytochrome interacting factor 3