PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_14739_BGI-A2_v1.0
Common NameF383_03596
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 307aa    MW: 34147.7 Da    PI: 6.7225
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_14739_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH53.73.7e-17147193455
                                 HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                         HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                  hn  ErrRRdriN+++  L+el+P++      K +Ka++L +A+eY+ksLq
  Cotton_A_14739_BGI-A2_v1.0 147 VHNLSERRRRDRINEKMRALQELIPHC-----NKTDKASMLDEAIEYLKSLQ 193
                                 6*************************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.01E-21141209IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.457143192IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.16E-19146197No hitNo description
PfamPF000101.8E-14147193IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-21147203IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.2E-19149198IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009585Biological Processred, far-red light phototransduction
GO:0009693Biological Processethylene biosynthetic process
GO:0010244Biological Processresponse to low fluence blue light stimulus by blue low-fluence system
GO:0010600Biological Processregulation of auxin biosynthetic process
GO:0010928Biological Processregulation of auxin mediated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MFSNFFSEFP AYDPMDHQHE QQEDDKSLKH KNNLMQREVN ELSGMAIGSS HCGSNQVRND  60
GDLSRGSSNG IGTTSTGLSV GTSKDDEDDY NGGQVENEKG TSVGVTSSQK RKNGDGREDY  120
ECQSEFAEDK PVRRSGSYRR RSRAAEVHNL SERRRRDRIN EKMRALQELI PHCNKTDKAS  180
MLDEAIEYLK SLQSQLQVMW MGNGMAPMMF PGIQHYMSPM AMGTAPPTMP SIQNQRFIQN  240
PTFSEQYARF LGFQHMQTAS QPINMFGYGS QTTPQSPTVL GFSNGSNQLN GGTTAANNTS  300
LSGKIVN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1138155RRRSRAAEVHNLSERRRR
2151156ERRRRD
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00082ChIP-seqTransfer from AT3G59060Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017610078.10.0PREDICTED: transcription factor PIF4-like
TrEMBLA0A0B0P6L30.0A0A0B0P6L3_GOSAR; Transcription factor PIF5-like protein
STRINGGorai.006G008800.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM34682561
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43010.21e-36phytochrome interacting factor 4