PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_14693_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family GATA
Protein Properties Length: 376aa    MW: 41531.5 Da    PI: 5.6573
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_14693_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA60.32.5e-19292326135
                        GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                                 Cs+Cg+tkTp+WR gp g ktLCnaCG+++++ +l
  Cotton_A_14693_BGI-A2_v1.0 292 CSHCGVTKTPQWRAGPMGAKTLCNACGVRFKSGRL 326
                                 *******************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169924.4E-9031368IPR016679Transcription factor, GATA, plant
PROSITE profilePS5011412.229286322IPR000679Zinc finger, GATA-type
SMARTSM004013.8E-18286340IPR000679Zinc finger, GATA-type
SuperFamilySSF577163.71E-14288349No hitNo description
Gene3DG3DSA:3.30.50.106.5E-15290324IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.14E-14291339No hitNo description
PROSITE patternPS003440292317IPR000679Zinc finger, GATA-type
PfamPF003203.6E-17292326IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 376 aa     Download sequence    Send to blast
FFFYFLFFFT FHVLLLFSTT PSLLPSSLQE MECVEAALKT SFRKEMALKP SPQAFLEDIW  60
VVNGQNGVSC DDFSVDDLFD FSNEEGFLQQ KRADEEDEEE EEVPASSSLP KRQKLSQDNG  120
HFSNDSTTNF DYGSLSTNEL AVPADDVENL EWLSHFVEDS FSEHSTAYPT GTLMEKPKLL  180
DGNLPEPEKS VTMTACFESP VPAKARSKRV RTGGRVWSLV ATPSLTESSS SSTSSSSSSS  240
PSPWMLCPNS GSGSIFELSE PLSVEKPPVK KHKKRPSTDT TGCNGTQPTR RCSHCGVTKT  300
PQWRAGPMGA KTLCNACGVR FKSGRLLPEY RPACSPTFSS ELHSNHHRKV LEMRRKKETL  360
GQAEPGLTPP VVPSFG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1268275VKKHKKRP
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF3135181e-104KF313518.1 Firmiana danxiaensis microsatellite a4964_SSR62 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017627216.10.0PREDICTED: GATA transcription factor 5-like
SwissprotQ9FH574e-98GATA5_ARATH; GATA transcription factor 5
TrEMBLA0A0B0PQS00.0A0A0B0PQS0_GOSAR; GATA transcription factor
STRINGGorai.007G197900.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36982561
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66320.22e-92GATA transcription factor 5