PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_14405_BGI-A2_v1.0
Common NameF383_06779
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 616aa    MW: 68126.3 Da    PI: 6.6196
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_14405_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.45.1e-13447493455
                                 HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                         HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                                 +h e+Er+RR+++N++f  Lr ++P+ +      K++Ka+ L  A+ YI++Lq
  Cotton_A_14405_BGI-A2_v1.0 447 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLGDAIAYINELQ 493
                                 799***********************66......******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142152.6E-5552240IPR025610Transcription factor MYC/MYB N-terminal
SuperFamilySSF474594.19E-18442506IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.047443492IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.12E-15446497No hitNo description
Gene3DG3DSA:4.10.280.106.0E-18447506IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.8E-10447493IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.8E-16449498IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 616 aa     Download sequence    Send to blast
MKIELGMGGG AWNDEDKAMV ATVLGTRAFD YLISSSVSNE NLLMTVSSDE NLQNKLSDLV  60
DRPNASNFSW NYAIFWQISR SKSGDWALGW GDGCCREPKE GEESESTRIL NLRLEDDTQQ  120
RMRKRVLQNL HTSFGGSDED NYALGLDRVT DTDMFFLASM YFSFPQGEGG PGKCFLSGKH  180
VWLSDALKSG SDYCVRSFLT KSAGVQTIVL VPTDVGVVEL GSVRSVPESM ELLQSIRSSF  240
SSNSSLLRAK QMVAAAPVVN EKKHENPSHF SNLGIVERVE GIPKIFGQDL NNASHGHSNY  300
REKLAVRKME DRPTWAAYAN GVKLPFTRNQ NGIHAPGWPH VHGVKQGSGT EFYGSQTTAN  360
NLQELVNGAR EEFRLNQYQS PKPVQMQIDF SGATSRPSPA TTRPLSAESE HSDVEASCKE  420
EKPSPADERR PRKRGRKPAN GREEPLNHVE AERQRREKLN QRFYALRAVV PNISKMDKAS  480
LLGDAIAYIN ELQAKLKVME SEREKFGSTS RDSAGLDPNI NAENHIGAAN IDVQAVHDEV  540
VVRVSCPLDS HPASRVIQAF KDAHINVLES KLVTADDTVF HTFVIKSQGS EQLTREKLIA  600
AFSCEPNSLQ PLSSLG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A6e-30441503264Transcription factor MYC2
5gnj_B6e-30441503264Transcription factor MYC2
5gnj_E6e-30441503264Transcription factor MYC2
5gnj_F6e-30441503264Transcription factor MYC2
5gnj_G6e-30441503264Transcription factor MYC2
5gnj_I6e-30441503264Transcription factor MYC2
5gnj_M6e-30441503264Transcription factor MYC2
5gnj_N6e-30441503264Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1428436RRPRKRGRK
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that negatively regulates jasmonate (JA) signaling (PubMed:30610166). Negatively regulates JA-dependent response to wounding, JA-induced expression of defense genes, JA-dependent responses against herbivorous insects, and JA-dependent resistance against Botrytis cinerea infection (PubMed:30610166). Plays a positive role in resistance against the bacterial pathogen Pseudomonas syringae pv tomato DC3000 (PubMed:30610166). {ECO:0000269|PubMed:30610166}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00100PBMTransfer from AT1G01260Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by wounding, feeding with herbivorous insects, infection with the fungal pathogen Botrytis cinerea and infection with the bacterial pathogen Pseudomonas syringae pv tomato DC3000. {ECO:0000269|PubMed:30610166}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017631194.10.0PREDICTED: transcription factor bHLH13-like
SwissprotA0A3Q7ELQ20.0MTB1_SOLLC; Transcription factor MTB1
TrEMBLA0A0B0MY900.0A0A0B0MY90_GOSAR; Transcription factor bHLH13-like protein
STRINGGorai.007G109300.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM37582759
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01260.30.0bHLH family protein
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Sun H,Fan HJ,Ling HQ
    Genome-wide identification and characterization of the bHLH gene family in tomato.
    BMC Genomics, 2015. 16: p. 9
    [PMID:25612924]
  3. Liu Y, et al.
    MYC2 Regulates the Termination of Jasmonate Signaling via an Autoregulatory Negative Feedback Loop.
    Plant Cell, 2019. 31(1): p. 106-127
    [PMID:30610166]