PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_14012_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 733aa    MW: 81620 Da    PI: 9.3082
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_14012_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.10.00067597123
                                EEETTTTEEESSHHHHHHHHHHT CS
                     zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                                +kC++C+k++  +s+ k+H + +
  Cotton_A_14012_BGI-A2_v1.0 75 WKCEKCSKRYAVQSDWKSHSKIC 97
                                58*****************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.602.9E-46396IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF534745.58E-36456594IPR029058Alpha/Beta hydrolase fold
Gene3DG3DSA:3.40.50.18206.1E-31459709IPR029058Alpha/Beta hydrolase fold
PfamPF121461.0E-13484611IPR022742Serine aminopeptidase, S33
SuperFamilySSF534745.58E-36642708IPR029058Alpha/Beta hydrolase fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005777Cellular Componentperoxisome
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 733 aa     Download sequence    Send to blast
MHVTLLSSVC RYVHSLNIGH NLPWKLKQRT KKEVVRKKVY VCPETTCVHH HPSRALGDLT  60
GIKKHFCRKH GEKKWKCEKC SKRYAVQSDW KSHSKICGTR EYRCDCGNLF SRRDSFITHR  120
AFCDALAEET ARAITAANQP GSSVSHINMT NLESQPLLHG YALHAPSLNR DQDQRFNARV  180
EAAGPDSGPP SINLSSSPFL LGHPLLHDEN PSQNPSSTTL LPFQAPPASP HTSATALLQK  240
AAQMGVTLSK PLQSPVVSMQ RPYYYHHQAH MCGSTTFATS RARGLSAREE LGSKFTHSLS  300
SFGNKAGVTP GFLEQVANAT KSSAVAGAGA AAPSSLLHDM MTSLSCTSEL EGSSSFEQSF  360
NGTWITKRNS NNFQENYIDR RNFSETKESQ SCRSDNHEGK GSGSSSNNIG GNDRLTRDFL  420
GLKAFPHTDI PNLVGLNHHI NSSSAYGQPN QHSETPWQVE ERRIVIRNSH GENLVGILLE  480
TGSKDLVIIC HGFQSKKERI PMVTLATTLG REGISAFRFD FAGNGESEGS FMYGNYRREA  540
EDLRAVVRHF RKNQRLITAI VGHSKGGNVV LLYSSKYNDV PTVINISGRF HLEKGMEGRL  600
GKDFLQRIKQ NGFIDVKNRE GQFEYRVTQE SLMDRLTTDI RAACLSIDQN CRVLTIHGSM  660
DKIVPAKDAL EFARFIRNHK LHIIEGADHE YTAHQDELAT VVLDFVKAVR EDRNSAERLQ  720
SCERAVNFIK ARI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C3e-3371138370Zinc finger protein JACKDAW
5b3h_F3e-3371138370Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12637KQRTKKEVVRKK
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6144591e-173JX614459.1 Gossypium hirsutum clone NBRI_GE57848 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017641355.10.0PREDICTED: protein indeterminate-domain 7-like
TrEMBLA0A2P5X5K20.0A0A2P5X5K2_GOSBA; Uncharacterized protein
STRINGGorai.009G044300.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2456034
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G55110.13e-71indeterminate(ID)-domain 7