PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_13908_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 237aa    MW: 25020.7 Da    PI: 6.4068
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_13908_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.62.1e-05211234123
                                 EEETTTTEEESSHHHHHHHHHH.T CS
                     zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                                 ++C+ C+ksF +   L++H +  H
  Cotton_A_13908_BGI-A2_v1.0 211 FSCGSCNKSFGSEGGLESHKKAkH 234
                                 89*****************99877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015711.863211237IPR007087Zinc finger, C2H2
PROSITE patternPS000280213234IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009294Biological ProcessDNA mediated transformation
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0010162Biological Processseed dormancy process
GO:0005730Cellular Componentnucleolus
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MEFWGIEVKS GQPIKADPGA NYVIHLSQAS LGESKNKAES VPLYVNVDGK KLILGTLSHQ  60
SCPQLSFDLV FDEEFELSHN WKNGSVYFLG MSSEEESEEE EEEELPVAAA AAAVNGKAKP  120
DGKTAKANAG KPDAMSMDES SDDEDEETPK KIESSKKRPA EAATPASAKK AKSAVTPQKT  180
DGKKGGHTAT PHPAKQSGKN SAKSPKSGGQ FSCGSCNKSF GSEGGLESHK KAKHGGK
Functional Description ? help Back to Top
Source Description
UniProtMediates the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events (By similarity). {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By fertilization. {ECO:0000269|PubMed:15082924}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ5274487e-99HQ527448.1 Gossypium herbaceum clone NBRI_B_2368 simple sequence repeat marker, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017650139.11e-132PREDICTED: histone deacetylase HDT1-like isoform X1
SwissprotQ6V9I64e-64HDT1_SOLCH; Histone deacetylase HDT1
TrEMBLA0A2P5VPD81e-135A0A2P5VPD8_GOSBA; Uncharacterized protein
STRINGGorai.009G088600.11e-127(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20272667
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G44750.22e-35histone deacetylase 3
Publications ? help Back to Top
  1. Lagacé M,Chantha SC,Major G,Matton DP
    Fertilization induces strong accumulation of a histone deacetylase (HD2) and of other chromatin-remodeling proteins in restricted areas of the ovules.
    Plant Mol. Biol., 2003. 53(6): p. 759-69
    [PMID:15082924]