PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_13901_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 251aa    MW: 27683 Da    PI: 4.7782
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_13901_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP248.13e-1556106155
                         AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                 + ++GVr+++   +Wv+eIr+p++   + r++lg+f  +e+Aa+a++ a ++l+g
  Cotton_A_13901_BGI-A2_v1.0  56 PVFRGVRQKR-GSKWVSEIREPYK---KSRIWLGTFLCPEMAARAYDVAVLALRG 106
                                 579***9655.899*******765...6*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.3E-856106IPR001471AP2/ERF domain
PROSITE profilePS5103220.69257114IPR001471AP2/ERF domain
SMARTSM003805.3E-2857120IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.4E-2757116IPR001471AP2/ERF domain
SuperFamilySSF541711.83E-1857116IPR016177DNA-binding domain
CDDcd000182.47E-2858116No hitNo description
PRINTSPR003674.7E-95869IPR001471AP2/ERF domain
PRINTSPR003674.7E-996116IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MEYLEIDSSS CKPCSPDSEL SSSSSTSSTY DLPLMVVSSS HKRKAGRKKF KETRHPVFRG  60
VRQKRGSKWV SEIREPYKKS RIWLGTFLCP EMAARAYDVA VLALRGKSAA LNFPDSASVL  120
PRAKSSSPKD IQIAAFAAAE AFKPITSTDI DPQPVGCSSS TSVSTENDEE KSVLDYGSML  180
DRSWSLETTN INDNEWNYGF MDEEALFNMP GLIDSMAEGL LLSSPAALQA QVYDCDDDVA  240
STFNIDLWGH Y
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX0886050.0JX088605.1 Gossypium hirsutum cultivar TM-1 AP2/ERF domain-containing transcription factor mRNA, complete cds.
GenBankKR2332550.0KR233255.1 Gossypium barbadense C-repeat binding factor 6-like protein (CBF6L) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017605892.10.0PREDICTED: ethylene-responsive transcription factor ERF024-like
TrEMBLA0A1U8PID10.0A0A1U8PID1_GOSHI; ethylene-responsive transcription factor ERF024-like
STRINGGorai.009G087700.11e-162(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2219245
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25490.11e-44C-repeat/DRE binding factor 1