PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_13838_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C3H
Protein Properties Length: 657aa    MW: 71902.4 Da    PI: 6.4346
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_13838_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.35.4e-08264284526
                                 --SGGGGTS--TTTTT-SS-SS CS
                     zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                                 +C+ f+r G C+ Gd C +aHg
  Cotton_A_13838_BGI-A2_v1.0 264 PCPEFRR-GACPKGDACEYAHG 284
                                 8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF484037.46E-1666152IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.201.2E-1671178IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029716.41473153IPR020683Ankyrin repeat-containing domain
SMARTSM002483.2E-473103IPR002110Ankyrin repeat
PfamPF127967.0E-1073141IPR020683Ankyrin repeat-containing domain
PROSITE profilePS500888.5237397IPR002110Ankyrin repeat
CDDcd002046.05E-1575176No hitNo description
PROSITE profilePS5008811.461108143IPR002110Ankyrin repeat
SMARTSM002480.001108140IPR002110Ankyrin repeat
PROSITE profilePS5010313.619259286IPR000571Zinc finger, CCCH-type
SMARTSM003567.1E-6259285IPR000571Zinc finger, CCCH-type
PfamPF006421.6E-5264284IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.7E-5264285IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.869294318IPR000571Zinc finger, CCCH-type
SMARTSM0035637294317IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 657 aa     Download sequence    Send to blast
MCSGSKSEHK PSSFIMEGEL QEPKAGSQSI LLELAASDDL VAFKSEVEEK GLDFGEASFW  60
YGRRIGLRKM GFEERTPLMI AAMFGSIEIL KYIIGSGKID VNRACGSDGV TALHCAVAGG  120
ADSSVEIVKL LLDTSADANC VDANGNKPVD LIVPGLKSSS NYRRKVIELL LNGDDVLKGE  180
EESDKTTMPQ LLKEGSEKRE YPMDVSLPDI NNGIYGTDDF RMYTFKVKPC SRAYSHDWTE  240
CPFVHPGENA RRRDPRKYPY SCVPCPEFRR GACPKGDACE YAHGVFESWL HPAQYRTRLC  300
KDETGCARKV CFFAHKPEEL RPVYASTGSA MPSPRSAAMN AVDMTTLSPL ALGSSSLPMP  360
TTSTPPMSPL ATSSSPKSGG LWQNNFNLTP PALQLTGRRL KTTFSARDFD LEMELLELEN  420
QLQQQQLMDE ISSLSSPSCW SKEYGRLGDL KPTNLDDAFG SLDPSLLPPL KGLSIKSGIQ  480
AQLQSPTGLR IRQNSNQLRS SYPTNLTSSP VRKPSAFGYD SSAAVAAAVM NSRSSAFAKR  540
SQSFIDRGAV TNPAGLAAPA NPTSTMSSNN LDWSSPNGKL DWGIQGDELN KLRKSASFRF  600
RNNHPAVRAT DMMASKMEEP DVSWVHSLVK DVTPMGTATL PSWVEQMYIE QQEQMVA
Functional Description ? help Back to Top
Source Description
UniProtInvolved in salt stress response. May positively modulate plant tolerance to salt stress. {ECO:0000269|PubMed:17609218}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt stress. {ECO:0000269|PubMed:17609218}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017646210.10.0PREDICTED: zinc finger CCCH domain-containing protein 29-like isoform X1
SwissprotQ9XEE60.0C3H29_ARATH; Zinc finger CCCH domain-containing protein 29
TrEMBLA0A2P5X4200.0A0A2P5X420_GOSBA; Uncharacterized protein
STRINGGorai.010G196500.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM87726107
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40140.20.0C3H family protein