PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_13625_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB_related
Protein Properties Length: 319aa    MW: 35612.9 Da    PI: 8.896
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_13625_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding40.75.4e-1396141247
                                 SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
             Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                 ++WT+eE+  ++++ ++lG+g+W+ I++     Rt+ q+ s+ qky
  Cotton_A_13625_BGI-A2_v1.0  96 KPWTEEEHRMFLEGLRKLGKGDWRGISKNYVISRTPVQVASHAQKY 141
                                 58*****************************89************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501588.598724IPR001878Zinc finger, CCHC-type
PROSITE profilePS5129419.15190146IPR017930Myb domain
TIGRFAMsTIGR015575.5E-1893144IPR006447Myb domain, plants
SuperFamilySSF466893.74E-1693147IPR009057Homeodomain-like
SMARTSM007173.6E-1194144IPR001005SANT/Myb domain
PfamPF002497.4E-1296141IPR001005SANT/Myb domain
CDDcd001673.79E-1097142No hitNo description
Gene3DG3DSA:1.10.10.604.9E-1197140IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MAKGTGRKCS HCGHNGHNSR TCSNGKRGYV KLFGVNIAAM AQTQECLMQR SFSMGNLPFH  60
AENHNNGGGV DDGYFSEGHI HSENHNAAAH DIKRAKPWTE EEHRMFLEGL RKLGKGDWRG  120
ISKNYVISRT PVQVASHAQK YFLRLQDAGN NRKKRRPSLF DMSFQESKSE SNECPWGSPS  180
KEPSTRDSSQ IVNRLPHLCS DDRSLMSMIA LPSSPTYNQT IQHMAEVTPN MMQSLPFLNA  240
KNYTGYCHDY FSKAIANVDV CVPSDHPSPR SVQDNMFTAD PGASSSTDDL LELKVAAPQS  300
SKSTTLPFIR VIRNTHNFH
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00573DAPTransfer from AT5G61620Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017635540.10.0PREDICTED: uncharacterized protein LOC108477505
TrEMBLA0A1U8M3110.0A0A1U8M311_GOSHI; uncharacterized protein LOC107933474
TrEMBLA0A2P5XI730.0A0A2P5XI73_GOSBA; Uncharacterized protein
STRINGGorai.008G213600.11e-121(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM60212747
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61620.11e-59MYB_related family protein