PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_13554_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB
Protein Properties Length: 271aa    MW: 30968.6 Da    PI: 9.4989
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_13554_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding29.81.4e-092569446
                                S-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS
             Myb_DNA-binding  4 WTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46
                                WT+eE +++ +a + +G +   +W ++a++++ g+t  +++  ++ 
  Cotton_A_13554_BGI-A2_v1.0 25 WTKEENKRFEHALAIYGDDvpdRWIKVAEMIP-GKTVLDVIKQYRE 69
                                *****************99*************.*******999986 PP
2Myb_DNA-binding39.51.3e-12124168347
                                 SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
             Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                 +WT++E+ +++ +  ++G+g+W+ I+r +   +t+ q+ s+ qky
  Cotton_A_13554_BGI-A2_v1.0 124 PWTEDEHRRFLMGLVKYGKGDWRNISRNFVVSKTPTQVASHAQKY 168
                                 8*****************************99************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.9E-41869IPR009057Homeodomain-like
PROSITE profilePS5129310.4932075IPR017884SANT domain
SMARTSM007175.2E-82173IPR001005SANT/Myb domain
SuperFamilySSF466897.59E-122377IPR009057Homeodomain-like
PfamPF002491.5E-82569IPR001005SANT/Myb domain
CDDcd001672.37E-82570No hitNo description
PROSITE profilePS5129419.617117173IPR017930Myb domain
SuperFamilySSF466895.66E-15119172IPR009057Homeodomain-like
TIGRFAMsTIGR015575.9E-18120172IPR006447Myb domain, plants
SMARTSM007172.1E-10121171IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.5E-11121173IPR009057Homeodomain-like
CDDcd001671.94E-8124168No hitNo description
PfamPF002496.3E-10124168IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MEALFSTSFM SNMDWFHQEN QNTYWTKEEN KRFEHALAIY GDDVPDRWIK VAEMIPGKTV  60
LDVIKQYREL EEDVSDIEAG RIPIPGYPTS SFTLELVDNH DFDGYRKRPN GAKGHDHERK  120
KGVPWTEDEH RRFLMGLVKY GKGDWRNISR NFVVSKTPTQ VASHAQKYYQ RQLSGGKDKR  180
RPSIHDITVL NLTSTTTFSD HRKALSVNQS NVLALQHKIA SMSKAVSLNG SVTVFDSGNG  240
NRFTSSQYQA AQNLYGNAYH GAHIKHQSSV F
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A3e-1525901176RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00347DAPTransfer from AT3G11280Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016742029.10.0PREDICTED: transcription factor DIVARICATA-like
RefseqXP_017604067.10.0PREDICTED: transcription factor DIVARICATA-like
SwissprotQ8S9H72e-83DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLA0A1U8NVL60.0A0A1U8NVL6_GOSHI; transcription factor DIVARICATA-like
STRINGGorai.011G279800.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM43402657
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11280.26e-98MYB family protein
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]