 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Cotton_A_13440_BGI-A2_v1.0 |
| Common Name | F383_23443 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
|
| Family |
GRF |
| Protein Properties |
Length: 403aa MW: 43935.8 Da PI: 8.2747 |
| Description |
GRF family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Cotton_A_13440_BGI-A2_v1.0 | genome | BGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | WRC | 81.4 | 7.9e-26 | 146 | 189 | 1 | 44 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44
d+epgrCrRtDGKkWRCsr+v++g+k+CErH+hrgr+rsrk++e
Cotton_A_13440_BGI-A2_v1.0 146 DPEPGRCRRTDGKKWRCSRDVVPGQKYCERHVHRGRNRSRKPVE 189
79***************************************997 PP
|
| 2 | QLQ | 51.3 | 3.5e-18 | 81 | 117 | 1 | 37 |
QLQ 1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37
s+F+ aQ+q+L+ Q+l+y+y++a++ vPpeLl +i+k
Cotton_A_13440_BGI-A2_v1.0 81 SYFSLAQWQELELQALIYRYMLAGAAVPPELLHPIKK 117
79*********************************86 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 403 aa
Download sequence Send
to blast |
MDLHLKQWRN QHESEQQPSA KIPKLLLDLD AHHHHHHHPQ QQQQHASSEP SALPLFVSES 60
NSKISGSLSA PLPDSNSRMG SYFSLAQWQE LELQALIYRY MLAGAAVPPE LLHPIKKSLL 120
YSSSYFLHHY QPALLQSGYW GRAAMDPEPG RCRRTDGKKW RCSRDVVPGQ KYCERHVHRG 180
RNRSRKPVEM PTSSSTAAEA NNSHVSVTAR FGGGGSGCGA VKASSPMTAS TLAAVANGPN 240
NFGLSRPSPP VDLLQLNHGS SESKTEPKGL FEAQNEVDDR SDGHILRHFF DDWPRTLQDP 300
DNNGTNASPM NSAPCLTISM PGNSSSDVSL KLSTGNGDSR REHHQQPPLN WAMGGWAASN 360
QVASMGGPLA EALRSSSTSN SSPTSVLHQL PKGSTSEISY IST
|
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcription activator that plays a role in the regulation of cell expansion in leaf and cotyledons tissues. Component of a network formed by miR396, the GRFs and their interacting factors (GIFs) acting in the regulation of meristem function, at least partially through the control of cell proliferation. {ECO:0000250}. |
| Regulation -- Description ? help
Back to Top |
| Source |
Description |
| UniProt | INDUCTION: microRNA 396 (miR396a or miR396b) negatively regulates growth-regulating factors (GRF1-4 and GRF7-9). {ECO:0000269|PubMed:15200956, ECO:0000269|PubMed:19453503, ECO:0000269|PubMed:20023165}. |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AM477984 | 1e-49 | AM477984.2 Vitis vinifera contig VV78X100436.13, whole genome shotgun sequence. |
| Publications
? help Back to Top |
- Kuijt SJ, et al.
Interaction between the GROWTH-REGULATING FACTOR and KNOTTED1-LIKE HOMEOBOX families of transcription factors.
Plant Physiol., 2014. 164(4): p. 1952-66
[PMID:24532604] - Cao Y,Han Y,Jin Q,Lin Y,Cai Y
Comparative Genomic Analysis of the GRF Genes in Chinese Pear (Pyrus bretschneideri Rehd), Poplar (Populous), Grape (Vitis vinifera), Arabidopsis and Rice (Oryza sativa).
Front Plant Sci, 2016. 7: p. 1750
[PMID:27933074]
|
