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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_13408_BGI-A2_v1.0 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | Nin-like | ||||||||
Protein Properties | Length: 297aa MW: 34316.2 Da PI: 6.0008 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 81.9 | 6.5e-26 | 139 | 188 | 3 | 52 |
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 k +s +++s+yF++pi +AAkeL+v+lT+LK++CR++GI+RWPhRk++sl Cotton_A_13408_BGI-A2_v1.0 139 KLLSRKVISQYFYMPIIQAAKELNVGLTLLKKRCRELGIRRWPHRKLTSL 188 67899******************************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51519 | 17.53 | 124 | 208 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 5.0E-21 | 141 | 188 | IPR003035 | RWP-RK domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 297 aa Download sequence Send to blast |
MANQCPLNGC WFKSSEMIAK EEEHYSSPFP PRLPLDSSTT VYCNPMDWQF PIEQGFYDEV 60 PLMSTFSTDP LYASLDIEQT STQDGYDENG NGFWDELGLL FEPCNKQPML KDEDINGEEV 120 MKKERVSSKR CKEDQRKAKL LSRKVISQYF YMPIIQAAKE LNVGLTLLKK RCRELGIRRW 180 PHRKLTSLRT LINNVQELEE GEERESKVRE AIEVLERERK MLEEMPDMDL EDKTKRLRQA 240 CFKANYKKRK LVPPSIMNQS PSSTGAVGSR ASDLDLITRA NCRRGLSDSF SSTISMI |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JX580452 | 2e-99 | JX580452.1 Gossypium hirsutum clone NBRI_GE12885 microsatellite sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017635951.1 | 0.0 | PREDICTED: protein RKD1-like | ||||
TrEMBL | A0A1U8M5M6 | 0.0 | A0A1U8M5M6_GOSHI; protein RKD1-like | ||||
STRING | Gorai.008G193400.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM12180 | 19 | 32 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G66990.1 | 2e-47 | RWP-RK domain-containing protein |