PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_13322_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family Dof
Protein Properties Length: 265aa    MW: 29528.9 Da    PI: 6.8547
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_13322_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof126.96.2e-403798263
                      zf-Dof  2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63
                                +e+alkcprC+stntkfCyynnyslsqPryfCk+CrryWtkGG lrnvPvGgg+rknk+sss
  Cotton_A_13322_BGI-A2_v1.0 37 PEEALKCPRCESTNTKFCYYNNYSLSQPRYFCKSCRRYWTKGGNLRNVPVGGGCRKNKRSSS 98
                                7899******************************************************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074783.0E-302395IPR003851Zinc finger, Dof-type
PfamPF027016.8E-343995IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.3394195IPR003851Zinc finger, Dof-type
PROSITE patternPS0136104379IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005730Cellular Componentnucleolus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MDPSRGLHQE MGNPLSENMV VNSKGQQQQE RKARPQPEEA LKCPRCESTN TKFCYYNNYS  60
LSQPRYFCKS CRRYWTKGGN LRNVPVGGGC RKNKRSSSKR TQDHAFTPSA NPLITPHHHP  120
IPPLTYDIDT NDLTLAFATV QKQSPSGQQL GFDDHDGDLS IFGNPSFNGN ALTSSFLGNH  180
SNFQSYCYDN IGMGGATTGL NGETMLPYNN QEMIDSTMAM GQDSENRVLW GLPWQLIAAD  240
NNMVGLGDLD LVRDNWNGLL NTPLM
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017643477.10.0PREDICTED: dof zinc finger protein DOF2.1
SwissprotQ8LE432e-49DOF21_ARATH; Dof zinc finger protein DOF2.1
TrEMBLA0A2P5X5A10.0A0A2P5X5A1_GOSBA; Uncharacterized protein
STRINGGorai.001G129500.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM69602743
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60200.19e-48TARGET OF MONOPTEROS 6