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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Cotton_A_13320_BGI-A2_v1.0 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family |
LBD |
Protein Properties |
Length: 197aa MW: 21484.3 Da PI: 5.6634 |
Description |
LBD family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Cotton_A_13320_BGI-A2_v1.0 | genome | BGI | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | DUF260 | 138.5 | 2.4e-43 | 35 | 134 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilkl 83
+CaaCk+lrr+Ca++Cvlapyfp ++p kf ++h++FGasn++k+l++lpe++r da+ss+vyeA ar+rdPvyG++g i +l
Cotton_A_13320_BGI-A2_v1.0 35 PCAACKILRRRCADKCVLAPYFPPTEPTKFTIAHRVFGASNIIKFLQELPESQRADAVSSIVYEASARIRDPVYGCAGAICQL 117
7********************************************************************************** PP
DUF260 84 qqqleqlkaelallkee 100
q+q+++l+a+la++++e
Cotton_A_13320_BGI-A2_v1.0 118 QKQVNELQAQLAKAQAE 134
*************9976 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 197 aa
Download sequence Send
to blast |
MEYTSEVAAQ SPSPKSSNSS SSPPPPPPTS VVISPCAACK ILRRRCADKC VLAPYFPPTE 60 PTKFTIAHRV FGASNIIKFL QELPESQRAD AVSSIVYEAS ARIRDPVYGC AGAICQLQKQ 120 VNELQAQLAK AQAEVVNMQL QQANLVALLC MEVAQSPQQN PHQPIDDFLS NSPQSYHSNP 180 SFLDDNNLGS SWEPLWT
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | JX615895 | 1e-112 | JX615895.1 Gossypium hirsutum clone NBRI_GE60161 microsatellite sequence. |