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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_13302_BGI-A2_v1.0 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | C2H2 | ||||||||
Protein Properties | Length: 450aa MW: 49982.9 Da PI: 9.4749 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.2 | 0.00012 | 8 | 28 | 3 | 23 |
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C++C+k F r nL+ H r H Cotton_A_13302_BGI-A2_v1.0 8 CEICNKGFQRDQNLQLHRRGH 28 *******************88 PP | |||||||
2 | zf-C2H2 | 12 | 0.00062 | 82 | 104 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k + +s+ k H + + Cotton_A_13302_BGI-A2_v1.0 82 WKCEKCSKKYAVQSDWKAHSKIC 104 58*****************9876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 4.03E-7 | 5 | 28 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 2.0E-5 | 5 | 28 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 0.11 | 6 | 28 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.824 | 6 | 28 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 8 | 28 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 100 | 47 | 77 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 1.4E-4 | 70 | 103 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 4.03E-7 | 77 | 102 | No hit | No description |
SMART | SM00355 | 140 | 82 | 102 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 450 aa Download sequence Send to blast |
MATNRFLCEI CNKGFQRDQN LQLHRRGHNL PWKLKQRTNK EVRKKVYICP EKTCVHHDPS 60 RALGDLTGIK KHFSRKHGEK KWKCEKCSKK YAVQSDWKAH SKICGTREYR CDCGTLFSRK 120 DSFITHRAFC DALAEESARF TSVSTNVNPA AASFRNDLIH GANNNGMHQF SSGFRPEFGG 180 LELVDNLNSN GQKPRLQLWL DEANNPFGIP SNANAFLAPK STSFPDLGMA PMNMFGSLTT 240 QWLGKYPEDA SFAGANLNMS ALRQGPKQEE ENKGDLSESI TSLYSNNSLQ QQQQQNYTHM 300 SATALLQKAA QMGSTRNNPA INNSGFGLIS SNTYDQNKNH VYKLFKQTND QSDNINELVS 360 SLSSNQAAIV KDGSALDDLK PSSFVRNASS KGKQGDQAVV LASKLNNTNS NEVESSLTRD 420 FLGVGGESSR PLLQQELAKF ASMGSIHPWS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 8e-38 | 78 | 146 | 3 | 71 | Zinc finger protein JACKDAW |
5b3h_F | 8e-38 | 78 | 146 | 3 | 71 | Zinc finger protein JACKDAW |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 32 | 44 | KLKQRTNKEVRKK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that, together with JKD, regulates tissue boundaries and asymmetric cell division in roots by a rapid up-regulation of 'SCARECROW' (SCR), thus controlling the nuclear localization of 'SHORT-ROOT' (SHR) and restricting its action (PubMed:25829440). Confines CYCD6 expression to the cortex-endodermis initial/daughter (CEI/CEID) tissues (PubMed:25829440). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). {ECO:0000269|PubMed:24821766, ECO:0000269|PubMed:25829440}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HQ527185 | 1e-133 | HQ527185.1 Gossypium herbaceum clone NBRI_E_EYT27PB03GHRJ2 simple sequence repeat marker, mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017626413.1 | 0.0 | PREDICTED: protein indeterminate-domain 9-like | ||||
Swissprot | Q944L3 | 1e-100 | IDD9_ARATH; Zinc finger protein BALDIBIS | ||||
TrEMBL | A0A1U8NYB2 | 0.0 | A0A1U8NYB2_GOSHI; protein indeterminate-domain 9-like | ||||
STRING | Gorai.001G131000.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM155 | 28 | 306 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G45260.1 | 1e-88 | C2H2-like zinc finger protein |
Publications ? help Back to Top | |||
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