PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_13280_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 315aa    MW: 34952.1 Da    PI: 7.4439
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_13280_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2120.000653355123
                                EEETTTTEEESSHHHHHHHHHHT CS
                     zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                                + C+ C+k F++   L  Hir H
  Cotton_A_13280_BGI-A2_v1.0 33 HICSVCSKGFTSGKALGGHIRIH 55
                                68*******************99 PP
2zf-C2H215.16.5e-0592113223
                                 EETTTTEEESSHHHHHHHHHHT CS
                     zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                                 +C  C+k F++  +L  H+r+H
  Cotton_A_13280_BGI-A2_v1.0  92 SCCVCNKDFKSMKSLFGHMRNH 113
                                 6********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.0563355IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.7853360IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.605.1E-43356IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.68E-73355No hitNo description
PfamPF139125.6E-83357IPR007087Zinc finger, C2H2
PROSITE patternPS0002803555IPR007087Zinc finger, C2H2
SuperFamilySSF576673.68E-786113No hitNo description
SMARTSM003550.1191113IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.01691118IPR007087Zinc finger, C2H2
PROSITE patternPS00028093113IPR007087Zinc finger, C2H2
PfamPF139124.8E-593113IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MENETVSSES SDLTPSRPNK FPKLKGPKSC NQHICSVCSK GFTSGKALGG HIRIHMKGNN  60
LDLHSRASKE KKRISKNIDD DAVDDQAKDK VSCCVCNKDF KSMKSLFGHM RNHPNRTWRG  120
IRPPPLEKNS CCSTVSEEDE ALENDQVSFA RDENFVSSLP KRSNSAKCCW NSDEEKIFEA  180
AYSLMKLSRD SFGVGYQTKS SPTTIHETPS WGLPNKASLE GKGKLLPKEL NCDESAEIIE  240
NNSCFDQFHK FPVKISSSQN FGFYLKNPSG PPAVVEGKHL YSASEAGEGS HQVCSRKLLD  300
VDLNEPYVGV DHDLT
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016747638.10.0PREDICTED: uncharacterized protein LOC107956520
TrEMBLA0A1U8PBE60.0A0A1U8PBE6_GOSHI; uncharacterized protein LOC107956520
STRINGGorai.001G133100.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM114552029
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26940.11e-21C2H2 family protein