PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_13143_BGI-A2_v1.0
Common NameF383_13555
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ARR-B
Protein Properties Length: 553aa    MW: 61758.6 Da    PI: 6.6851
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_13143_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like86.82.1e-27318371256
                     G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                                  +++Wt+eLH++Fv+av+qL G+++A+P++ilelmkv+gLt+++v+SHLQkYR++
  Cotton_A_13143_BGI-A2_v1.0 318 LKVDWTTELHKKFVQAVDQL-GIDQAIPSRILELMKVEGLTRHNVASHLQKYRMH 371
                                 5899****************.********************************96 PP
2Response_reg23.23.4e-09201261109
                                 EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTT.SEHHHHHHHHHHHTTTSEEEEEEST CS
                Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempg.mdGlellkeireeepklpiivvtah 80 
                                 vl+ d++ + +  +++ le  +y +v ++ +  eal+ +  +   +++ ++ +       G+++l++ +    +lp i+ +  
  Cotton_A_13143_BGI-A2_v1.0  20 VLLLDEDTNSAAEIKSKLEAMDY-IVYTFCNENEALAAVSSRPesFHVAIVEVCTNSnNGGFKFLETAK----DLPTIMTSNI 97 
                                 79999999999************.***************666666*******88777477888887654....5788888877 PP

                                 TTHHHHHHHHHTTESEEEESS--HHHHHH CS
                Response_reg  81 geeedalealkaGakdflsKpfdpeelvk 109
                                    +++ +++ +Ga +fl Kp ++++l++
  Cotton_A_13143_BGI-A2_v1.0  98 HCISTMMKCIALGAVEFLRKPLSEDKLRN 126
                                 77************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.23001.6E-1516136No hitNo description
SuperFamilySSF521723.13E-1516134IPR011006CheY-like superfamily
PROSITE profilePS5011019.76219132IPR001789Signal transduction response regulator, receiver domain
PfamPF000721.3E-620127IPR001789Signal transduction response regulator, receiver domain
CDDcd001562.29E-721131No hitNo description
PROSITE profilePS5129415.194314373IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.2E-26315373IPR009057Homeodomain-like
SuperFamilySSF466894.84E-18316374IPR009057Homeodomain-like
TIGRFAMsTIGR015577.5E-25317372IPR006447Myb domain, plants
PfamPF002493.4E-7320369IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 553 aa     Download sequence    Send to blast
MVCTRNDLSA WKDFPKGLRV LLLDEDTNSA AEIKSKLEAM DYIVYTFCNE NEALAAVSSR  60
PESFHVAIVE VCTNSNNGGF KFLETAKDLP TIMTSNIHCI STMMKCIALG AVEFLRKPLS  120
EDKLRNIWQH VVHKAFSVGG DDLSESLKPV KDYVASMLHQ QLENGECKHE DLDKIEDASM  180
VHEKDHEPSA VNNKYPAPST PQLQQGGRLI VNGDCQEHTN CSMEKESGEP DGESKSVETT  240
SGHTIAEVIA PVGQHQKPRE TMVKEEADSV DGAKGERTVD SHPQDRVHGE DSCAGAEKPN  300
TVSGLHSSRP NKANRKKLKV DWTTELHKKF VQAVDQLGID QAIPSRILEL MKVEGLTRHN  360
VASHLQKYRM HKRHILPKED DPRWPRRDQT QRSCHPHKPI MAFPPYHSNP VPVGPVYSMW  420
GAPHPASIQT WGSHGYYHPW QPTESWQWKP YPGVHADAWG CPVMPIPQGN CSTFAQNGYG  480
FHCSSTMDNR SGMPQNSIQH QPAEEVIDEV VKEAINKPWL PLPLGLKPPS TDSVLAELSR  540
QGISTIPPRN QRL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A4e-16315370358ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017626963.10.0PREDICTED: two-component response regulator-like APRR2
RefseqXP_017626964.10.0PREDICTED: two-component response regulator-like APRR2
RefseqXP_017626965.10.0PREDICTED: two-component response regulator-like APRR2
SwissprotQ6LA431e-138APRR2_ARATH; Two-component response regulator-like APRR2
TrEMBLA0A1U8KSE60.0A0A1U8KSE6_GOSHI; two-component response regulator-like APRR2
STRINGGorai.004G188300.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM57462747
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18020.61e-142ARR-B family protein
Publications ? help Back to Top
  1. Gong L, et al.
    Transcriptome Profiling of the Potato (Solanum tuberosum L.) Plant under Drought Stress and Water-Stimulus Conditions.
    PLoS ONE, 2015. 10(5): p. e0128041
    [PMID:26010543]