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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_13010_BGI-A2_v1.0 | ||||||||
Common Name | F383_15782 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | Trihelix | ||||||||
Protein Properties | Length: 261aa MW: 31288 Da PI: 6.6029 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 77.7 | 1.7e-24 | 6 | 87 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdql 85 +W ++e+++Li +r e+e+++ ++k +k+lWe vs++m++rg++r+p qCk+kw+nl +ryk ++++ ++ ++p+f++l Cotton_A_13010_BGI-A2_v1.0 6 QWGQEETRELIFIRGELERDFTAAKHNKTLWEIVSARMKDRGYTRTPDQCKSKWKNLLNRYKGKETSDPEN----GCQFPFFEEL 86 7**************************************************************99999985....44689***99 PP trihelix 86 e 86 + Cotton_A_13010_BGI-A2_v1.0 87 D 87 8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 8.258 | 1 | 63 | IPR017877 | Myb-like domain |
SMART | SM00717 | 2.1E-4 | 3 | 65 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.6E-5 | 4 | 65 | IPR009057 | Homeodomain-like |
Pfam | PF13837 | 5.3E-22 | 6 | 88 | No hit | No description |
SuperFamily | SSF46689 | 1.39E-5 | 6 | 88 | IPR009057 | Homeodomain-like |
CDD | cd12203 | 7.09E-22 | 6 | 70 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 261 aa Download sequence Send to blast |
MLGSGQWGQE ETRELIFIRG ELERDFTAAK HNKTLWEIVS ARMKDRGYTR TPDQCKSKWK 60 NLLNRYKGKE TSDPENGCQF PFFEELDAVF TERAKTMQRR LLEPEAGSSS TQAKKKVKRT 120 TTERSSDEFS EGEDEDESEE EKPARGTSHK RKKSDSTVVD KSPRPNSGTR TGLQEMLREF 180 FDQQLRMEMQ WREMMEKRAQ ERQLFEQEWQ QWMEKLERER LMVEKAWRER EEEMRRREES 240 RAERRDSLLT TLLNKLINDN N |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ebi_A | 4e-15 | 7 | 85 | 7 | 86 | DNA binding protein GT-1 |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF651784 | 0.0 | EF651784.1 Gossypium hirsutum transcription factor TF2 (TF2) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017624198.1 | 0.0 | PREDICTED: trihelix transcription factor GT-3b-like | ||||
TrEMBL | A0A0B0PUS4 | 0.0 | A0A0B0PUS4_GOSAR; Trihelix transcription factor GT-3b-like protein | ||||
STRING | Gorai.004G174900.1 | 1e-160 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM17512 | 9 | 10 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G38250.1 | 2e-38 | Trihelix family protein |