PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_12716_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family GRAS
Protein Properties Length: 531aa    MW: 59080.7 Da    PI: 4.6372
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_12716_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS362.18.2e-1111535231374
                        GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar..svselykalppsetsekn.sseelaa 80 
                                 lv+lLl+cAeav  +d +la+++L+++   a+p gd++qR+  +f+ +L++rl+   +v++   + ++  + ++   +e++ a
  Cotton_A_12716_BGI-A2_v1.0 153 LVHLLLACAEAVGCRDIHLATSMLSQIGASATPLGDSLQRVSYCFAIGLKSRLSLlqNVNGNGTIANCAIDVPMIaREEKMEA 235
                                 68**************************************************98732333334444555554444689999** PP

                        GRAS  81 lklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetge 163
                                 ++l+++++P++ f++l+aN+aI +a++g+  +HiiD+++++ lQWp+L++aLasRpegpp+lRiT++ s e  +  ele+  +
  Cotton_A_12716_BGI-A2_v1.0 236 FQLLYQTTPYIAFGFLAANEAIFQAAQGKGSLHIIDLGMKHTLQWPSLIRALASRPEGPPTLRITALTSDE--DLVELEASMK 316
                                 *********************************************************************55..99******** PP

                        GRAS 164 rLakfAeelgvpfefnvlvak.rledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe 245
                                  L + A++lg+ +ef+++ +  + + l+ ++L++++gE+l +n+v++lh+ ++es  + +   ++L+++k+l P ++++veq+
  Cotton_A_12716_BGI-A2_v1.0 317 SLLEDASSLGIAMEFHLISEPvTPSLLTRDNLNLREGESLYINSVMHLHKYVKESRGSLK---AILQAIKKLGPALLTMVEQD 396
                                 *****************7443588999*************************88776666...9******************* PP

                        GRAS 246 adhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvp 328
                                 a+hn++ Fl rfle+l+yysa+fdslea+lpr+s +r+k+Er  +++ei+n+va eg++r erhe++ +Wr++l++aGF+ + 
  Cotton_A_12716_BGI-A2_v1.0 397 ANHNGPFFLGRFLESLHYYSAIFDSLEASLPRHSPQRMKIERLHFAEEIRNIVAYEGTDRMERHERADQWRRQLGRAGFQVMG 479
                                 *********************************************************************************99 PP

                        GRAS 329 lsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                                 l+    +qa+++l+ ++ dgy++ +e+g+l+lgWk+rpL+ +SaW+
  Cotton_A_12716_BGI-A2_v1.0 480 LK--CLSQARMMLSVYGCDGYSLGSEKGCLLLGWKGRPLMLASAWQ 523
                                 85..89***************************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098554.034127505IPR005202Transcription factor GRAS
PfamPF035142.8E-108153523IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 531 aa     Download sequence    Send to blast
MEGFNGWLYE SFNHDFAIRR FCSARVELEQ GELGDAMNND TEPFCPDDEI STPHLAASEV  60
DDFVDSFINM DYDDDDGDGD GEGDDKNDRN SKKQQNFHHF QDKIEAFSIV NDDSLMMEGD  120
ELEMSSSCED LGANEMVPSI EEASHGVDQG LHLVHLLLAC AEAVGCRDIH LATSMLSQIG  180
ASATPLGDSL QRVSYCFAIG LKSRLSLLQN VNGNGTIANC AIDVPMIARE EKMEAFQLLY  240
QTTPYIAFGF LAANEAIFQA AQGKGSLHII DLGMKHTLQW PSLIRALASR PEGPPTLRIT  300
ALTSDEDLVE LEASMKSLLE DASSLGIAME FHLISEPVTP SLLTRDNLNL REGESLYINS  360
VMHLHKYVKE SRGSLKAILQ AIKKLGPALL TMVEQDANHN GPFFLGRFLE SLHYYSAIFD  420
SLEASLPRHS PQRMKIERLH FAEEIRNIVA YEGTDRMERH ERADQWRRQL GRAGFQVMGL  480
KCLSQARMML SVYGCDGYSL GSEKGCLLLG WKGRPLMLAS AWQLHNVSSA Y
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A6e-6216052225377Protein SCARECROW
5b3h_D6e-6216052225377Protein SCARECROW
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017640222.10.0PREDICTED: DELLA protein RGL1-like
TrEMBLA0A1U8KMS20.0A0A1U8KMS2_GOSHI; DELLA protein RGL1-like
STRINGGorai.002G110100.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17612910
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.13e-82RGA-like 1