PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_12618_BGI-A2_v1.0
Common NameF383_05145
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family SBP
Protein Properties Length: 982aa    MW: 108921 Da    PI: 6.1316
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_12618_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP129.61.1e-40152229178
                                 --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
                         SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                                 +Cqv++C+adls+ak+yhrrhkvCe+hska+++lv +++qrfCqqCsrfh l+efD++krsCrrrLa+hn+rrrk+++
  Cotton_A_12618_BGI-A2_v1.0 152 VCQVDDCRADLSDAKDYHRRHKVCEMHSKASKTLVGNVMQRFCQQCSRFHVLQEFDDGKRSCRRRLAGHNKRRRKRNP 229
                                 6**************************************************************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.3E-33146214IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.017150227IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.22E-37151232IPR004333Transcription factor, SBP-box
PfamPF031102.2E-29153226IPR004333Transcription factor, SBP-box
Gene3DG3DSA:1.25.40.206.7E-5749866IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484035.6E-6749864IPR020683Ankyrin repeat-containing domain
CDDcd002044.62E-6750864No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 982 aa     Download sequence    Send to blast
MEARYGSEAQ LYGVSPEDLQ AVGKRTLEWN LNDWKWDGDL FVASRMNPVS ADGMGRQFFP  60
LGSSIPGNSS NSSSSCSDEV DLETERKREL EKRRRVTVVK DDSLNEEAGS LTLKLGGQDS  120
HGNLLSQRDT INWEGTSGKK TKLSGGSGNR AVCQVDDCRA DLSDAKDYHR RHKVCEMHSK  180
ASKTLVGNVM QRFCQQCSRF HVLQEFDDGK RSCRRRLAGH NKRRRKRNPE AVVNGNSLND  240
EQTSGYLLLS LLKILSNLHS NTSGQATDQD VLSHLLRSLA NHTNEQGGRN ISGLLPVPQD  300
IEAVSALFSN GQGPPQLFKQ HITGPALEMP QKAVCSHDTR GAEVQGSAAG VVKMNDFDLN  360
DIYIDSDNST DDIERSPAPV NIGTSSLDCP SWVQQTSHQS SPPQTSRNSD SASGQSPSSS  420
SGGAQSRTDR IVFKLFGKEP NDFPLVLRAQ ILHWLSHSPT DIESYIRPGC IVLTIYLRQA  480
EAAWDDLCSN LSFSLSRLLD CSDDTFWRTG WICIRVQDQI AFIYNGQVLV DMYLPLGSVR  540
YSKIVNVKPI AVSATERAQF SVKGINLSRP ATRLLCSVEG KYLVQNDSHE LIDDNDDFKE  600
QDELQCINFS CSIPTVTGRG FIEIEDPCFS SSFFPFIVAE DDVCSEIRML ESLLEITDTD  660
ADVGRMEAKN VAMDFIHEVG WLLHRSQLKS RLGQLDPSSE SFSLRRFKWL MEFSMDHEWC  720
AVVKKLLNIL LDGTVGSGEH HSIDLALTEM SLLHRAVRKN CRPLAELLLR FIPENASDKL  780
GFENGTVAAG VDKTFLFRPD VLGPGGLTPL HIAAGKDGSE DVLDALTDDP GKVGIDAWNS  840
AQDSTGSTPE DYARLRGHYS YIHLVQRKIN KRSPSGHVVV DIPATPSVSS TNQKQNNETT  900
TSFEISQLEL RPVKRHCKLC DQKLPYSYGM VTNMSLSYRP AMLSMVAIAA VCVCVALLFK  960
SCPEVVYVFR PFRWELLDYG AS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A3e-32144226384squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
19195KRRRV
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000269|PubMed:16554053}.
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' of AP1 promoter. Binds specifically to the 5'-GTAC-3' core sequence. {ECO:0000269|PubMed:10524240, ECO:0000269|PubMed:16095614}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ6223240.0KJ622324.1 Gossypium hirsutum SQUAMOSA promoter binding-like transcription factor (SPL16) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017626188.10.0PREDICTED: squamosa promoter-binding-like protein 1
SwissprotQ9S7P50.0SPL12_ARATH; Squamosa promoter-binding-like protein 12
SwissprotQ9SMX90.0SPL1_ARATH; Squamosa promoter-binding-like protein 1
TrEMBLA0A0B0PPF90.0A0A0B0PPF9_GOSAR; Squamosa promoter-binding-like protein 1
STRINGGorai.004G047200.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30302764
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47070.10.0squamosa promoter binding protein-like 1
Publications ? help Back to Top
  1. Jung S, et al.
    Synteny conservation between the Prunus genome and both the present and ancestral Arabidopsis genomes.
    BMC Genomics, 2006. 7: p. 81
    [PMID:16615871]
  2. Jorgensen SA,Preston JC
    Differential SPL gene expression patterns reveal candidate genes underlying flowering time and architectural differences in Mimulus and Arabidopsis.
    Mol. Phylogenet. Evol., 2014. 73: p. 129-39
    [PMID:24508602]
  3. Chao LM, et al.
    Arabidopsis Transcription Factors SPL1 and SPL12 Confer Plant Thermotolerance at Reproductive Stage.
    Mol Plant, 2017. 10(5): p. 735-748
    [PMID:28400323]