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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_12302_BGI-A2_v1.0 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | FAR1 | ||||||||
Protein Properties | Length: 843aa MW: 97002.7 Da PI: 7.0463 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 89.1 | 6.3e-28 | 80 | 167 | 1 | 91 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtklel 83 +fY+eYAk++GF++++++s++sk+++e+++++f Cs++g + e++ ++r++++++t+Cka+++vk++ dgkw ++++++ Cotton_A_12302_BGI-A2_v1.0 80 SFYQEYAKSMGFTTSIKNSRRSKKSKEFIDAKFACSRYGVTPESDVG---SSRRSSVKKTDCKASMHVKRRPDGKWIIHEFVK 159 5****************************************999877...889999*************************** PP FAR1 84 eHnHelap 91 eHnHel p Cotton_A_12302_BGI-A2_v1.0 160 EHNHELLP 167 *****975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 2.3E-25 | 80 | 167 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 1.0E-28 | 287 | 380 | IPR018289 | MULE transposase domain |
PROSITE profile | PS50966 | 10.373 | 567 | 603 | IPR007527 | Zinc finger, SWIM-type |
Pfam | PF04434 | 9.4E-7 | 576 | 602 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 8.4E-8 | 578 | 605 | IPR006564 | Zinc finger, PMZ-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010018 | Biological Process | far-red light signaling pathway | ||||
GO:0042753 | Biological Process | positive regulation of circadian rhythm | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 843 aa Download sequence Send to blast |
MMIKIGENQN AISNMVDCRD AMPCNDGVNE NMVDIVDETA RSRDSGIVDT SKRAVVGFEG 60 DAEFEPHNGI EFESHEAAYS FYQEYAKSMG FTTSIKNSRR SKKSKEFIDA KFACSRYGVT 120 PESDVGSSRR SSVKKTDCKA SMHVKRRPDG KWIIHEFVKE HNHELLPALA YHFRIYRNVK 180 LAEKNNIDIL NAVSERTRKM YVEMSRQSGG YQNVNMLQSD IKNQFDKSRH LVVDEGDAQI 240 MLEYFKRIKK ENPDFFYAID LNEEQRLRNL FWVDAKSRND YPSFNDVVSF DTTYVKFNEK 300 LPFAPFVGVN HHFQSMLLGC ALLADETKPT FVWLMKTWLR AMGGQAPKVI ITDQDKELKA 360 AVEEVFPNTR HCFALWHILE KIPKSLAHVI GPHENFLPKF NKCIFKSWTD EEFDMRWWKM 420 ITLFELQDDE WVQSLYEDRK RWVPAFMDNV FLAGMSTSQR SESMNSFFDK YIHKKITLKE 480 FVKQYGAILQ NRYEEEAVAD FDTWQKQPAL RSPSPWEKQM SIVYTHAIFK RFQVEVLGVV 540 GCHPKRENEN QGTIPFRVQD CEKDENFMVI WNEEKSEVSC SCRLFEYRGF LCRHAMIVLQ 600 MCGRTSIPPR YILKRWTKDA KSGQSTTEGT DRVQTRVQRY NDLCKHAIEL SEEGSLSEES 660 YNIAFCVLVE ALKNCVNVNN SCISAVESTG HAQGLREAEE KNQGSLASKS SKKKSTSRKR 720 KGQSEPALMF VDTQDSLQPM ENLSSDGITL NGYYGAQQNV QGLVQLNLME PPHDGYYVNQ 780 QSMQGLGQLN SMAPGHDSFF GTQQSMHGLG QLDYRPSASF TYALQDESQL RSTQLHGGVS 840 RHP |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that recognizes and binds to the DNA consensus sequence 5'-CACGCGC-3'. Activates the expression of FHY1 and FHL involved in light responses. Positive regulator of chlorophyll biosynthesis via the activation of HEMB1 gene expression. {ECO:0000269|PubMed:11889039, ECO:0000269|PubMed:12753585, ECO:0000269|PubMed:18033885, ECO:0000269|PubMed:22634759}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00434 | DAP | Transfer from AT4G15090 | Download |
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Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Down-regulated after exposure to far-red light. Subject to a negative feedback regulation by PHYA signaling. {ECO:0000269|PubMed:18033885}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017630930.1 | 0.0 | PREDICTED: protein FAR-RED IMPAIRED RESPONSE 1 | ||||
Refseq | XP_017630931.1 | 0.0 | PREDICTED: protein FAR-RED IMPAIRED RESPONSE 1 | ||||
Refseq | XP_017630932.1 | 0.0 | PREDICTED: protein FAR-RED IMPAIRED RESPONSE 1 | ||||
Swissprot | Q9SWG3 | 0.0 | FAR1_ARATH; Protein FAR-RED IMPAIRED RESPONSE 1 | ||||
TrEMBL | A0A1U8L5X4 | 0.0 | A0A1U8L5X4_GOSHI; protein FAR-RED IMPAIRED RESPONSE 1-like | ||||
STRING | Gorai.007G173400.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM118 | 26 | 253 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G15090.1 | 0.0 | FAR1 family protein |