PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_12235_BGI-A2_v1.0 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | bHLH | ||||||||
Protein Properties | Length: 293aa MW: 32468.2 Da PI: 7.6292 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 30.7 | 5.8e-10 | 207 | 250 | 7 | 55 |
HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 ++ ++RR+ri +++ L+el+P+ K++ +++LekA+ Y+k Lq Cotton_A_12235_BGI-A2_v1.0 207 IAAKNRRERISERLKILQELVPNG-----SKVDLVTMLEKAISYVKFLQ 250 5679*******************5.....5******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 8.11E-14 | 198 | 259 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.326 | 200 | 249 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 3.9E-12 | 201 | 257 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.62E-11 | 202 | 254 | No hit | No description |
SMART | SM00353 | 9.9E-12 | 206 | 255 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 4.6E-7 | 208 | 250 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 293 aa Download sequence Send to blast |
MALAKDPICS LQTSAFNNGN FDEGGDDHLK KLGGGVNNFP MTSSSFSSPR SIDSDSFVFR 60 PPHEEVHSLI NFKGSSMYDN FIHQYHHGTN YGSLLSFEQN EKAPRSGTYL KRASHKDNYS 120 MWDPRLVEDF SCFETASNFS SKENNGDWLY SESAMDADSI PELRSPGVAG VKRLNTGDST 180 QALKKQCSNE AKRAKSKSGP SKDPQSIAAK NRRERISERL KILQELVPNG SKVDLVTMLE 240 KAISYVKFLQ LQVKVLATDE FWPVQGGKAP DISQVREAID AILSSSKKDI NSS |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017646036.1 | 0.0 | PREDICTED: putative transcription factor bHLH086 | ||||
Swissprot | Q9FJ00 | 1e-66 | BH086_ARATH; Putative transcription factor bHLH086 | ||||
TrEMBL | A0A1U8MDL5 | 0.0 | A0A1U8MDL5_GOSHI; putative transcription factor bHLH086 | ||||
STRING | Gorai.001G086800.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4260 | 28 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G37800.1 | 3e-68 | RHD SIX-LIKE 1 |
Publications ? help Back to Top | |||
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