PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_12092_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 462aa    MW: 50241.7 Da    PI: 9.8437
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_12092_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.45.2e-055476123
                                EEETTTTEEESSHHHHHHHHHHT CS
                     zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                                + C++C+k F r  nL+ H r H
  Cotton_A_12092_BGI-A2_v1.0 54 FICEICKKGFQRDQNLQLHRRGH 76
                                89*******************88 PP
2zf-C2H212.90.00034130152123
                                 EEETTTTEEESSHHHHHHHHHHT CS
                     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                 +kC++C+k +  +s+ k H +t+
  Cotton_A_12092_BGI-A2_v1.0 130 WKCEKCSKKYAVQSDWKAHSKTC 152
                                 58*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.607.1E-55376IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.04E-65376No hitNo description
SMARTSM003550.055476IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.5335476IPR007087Zinc finger, C2H2
PROSITE patternPS0002805676IPR007087Zinc finger, C2H2
SMARTSM0035510095125IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.1E-4118151IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.04E-6125150No hitNo description
SMARTSM00355140130150IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 462 aa     Download sequence    Send to blast
ASIGGFIQDP SNANPNPKPN ANPAKKKRNL PGTPDPDAEV IALSPKTLMA TNRFICEICK  60
KGFQRDQNLQ LHRRGHNLPW KLRQRTNKEV RKKVYICPEK TCVHHDPSRA LGDLTGIKKH  120
FSRKHGEKKW KCEKCSKKYA VQSDWKAHSK TCGTREYKCD CGTLFSRKDS FITHRAFCDA  180
LAEESARLTS VAATSLNFRN DTVNLPHGFA SRGVQDVAGI PQFGSGFPQD FSGMLHQVGN  240
CTIFVSHLSI YLYIVTNYVG GYSLLLNLSL LSEMVQMAPA NPFGSSSHFP GFENGGATSS  300
NSNNLSLSQL PQGLKEEGGN EGNLMESLSS LYSDNQNKQS KANASPMSAT ALLQKAAQMG  360
STRSSPSFFG NSFGVMSSSS SHTAPTFMAS SSASMSAKSN NLDKLMLQTG GKPSEPSLLS  420
MHHPGSNSFA QSLTRDFLGM SNDQSPRPFL PQELAKYAAI GS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C2e-38126192369Zinc finger protein JACKDAW
5b3h_F2e-38126192369Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18092KLRQRTNKEVRKK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017608541.10.0PREDICTED: zinc finger protein JACKDAW-like
TrEMBLA0A0B0MFZ60.0A0A0B0MFZ6_GOSAR; Zinc finger JACKDAW-like protein
TrEMBLA0A1U8HUB10.0A0A1U8HUB1_GOSHI; zinc finger protein JACKDAW-like
TrEMBLA0A2P5WHA50.0A0A2P5WHA5_GOSBA; Uncharacterized protein
STRINGGorai.006G167600.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15528306
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03150.11e-108C2H2-like zinc finger protein