PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_12042_BGI-A2_v1.0
Common NameF383_32361
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB
Protein Properties Length: 551aa    MW: 61107.7 Da    PI: 8.5898
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_12042_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.94.3e-1759105148
                                 TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
             Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                 +g WT+eEde l +av+ + g++Wk+Ia+ ++  R++ qc +rwqk+l
  Cotton_A_12042_BGI-A2_v1.0  59 KGGWTPEEDETLRNAVATFKGKSWKKIAESFP-DRSEVQCLHRWQKVL 105
                                 688*****************************.************986 PP
2Myb_DNA-binding61.71.5e-19111157148
                                 TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
             Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                 +g+WT+eEd+++v++v ++G+  W+ Ia+ ++ gR +kqc++rw+++l
  Cotton_A_12042_BGI-A2_v1.0 111 KGPWTQEEDDKIVELVSKYGPTKWSVIAKSLP-GRIGKQCRERWHNHL 157
                                 79******************************.*************97 PP
3Myb_DNA-binding52.51.1e-16163206146
                                 TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
             Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                                 +++WT eE++ l +a++ +G++ W+ Ia+ ++ gRt++ +k++w++
  Cotton_A_12042_BGI-A2_v1.0 163 KDAWTLEEELALMNAHRVYGNK-WAEIAKVLP-GRTDNAIKNHWNS 206
                                 679*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.47854105IPR017930Myb domain
SuperFamilySSF466893.09E-1555112IPR009057Homeodomain-like
SMARTSM007171.3E-1458107IPR001005SANT/Myb domain
PfamPF002497.8E-1659105IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.0E-2261113IPR009057Homeodomain-like
CDDcd001671.29E-1262105No hitNo description
PROSITE profilePS5129432.538106161IPR017930Myb domain
SuperFamilySSF466894.87E-32108204IPR009057Homeodomain-like
SMARTSM007173.2E-18110159IPR001005SANT/Myb domain
PfamPF002491.2E-18111157IPR001005SANT/Myb domain
CDDcd001671.23E-15113157No hitNo description
Gene3DG3DSA:1.10.10.601.7E-27114160IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.2E-23161212IPR009057Homeodomain-like
SMARTSM007171.6E-15162210IPR001005SANT/Myb domain
PROSITE profilePS5129422.191162212IPR017930Myb domain
PfamPF002499.4E-15163206IPR001005SANT/Myb domain
CDDcd001679.67E-12165205No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 551 aa     Download sequence    Send to blast
MTELKIEERC LENKQLTTAS SSSVSEGGGS AIVKSPAISS PAPTSPNHRR TTGPIRRAKG  60
GWTPEEDETL RNAVATFKGK SWKKIAESFP DRSEVQCLHR WQKVLNPDLV KGPWTQEEDD  120
KIVELVSKYG PTKWSVIAKS LPGRIGKQCR ERWHNHLNPD IKKDAWTLEE ELALMNAHRV  180
YGNKWAEIAK VLPGRTDNAI KNHWNSSMKK KLDFYLATGK LPPVVKIVLK NETKDIETPA  240
ATKNLLVYSK KESDSTAQTS SGTIDICKPE EDGKDQLESS TPVQDMAASS SIIPSESVET  300
ESAELKPQSF DANPCSCNSV TVVKFESRRT SSAIVEDKVV ETQLRSDTPT YGPLCYEPPR  360
LQGGTLLDSD NLNKKGMQHE WTSTPITSPV SFFTPPCVKG SGFGTQSPES ILRIAAKTFP  420
NTPSIFRKRK TSPNKIGKPN EETTKNRVQL SGEQERTENS REQAQFRDGS SCESPAFQGN  480
SSIGPNCTAF NASPPYRLRS KRTAVFKSVE RQLEFAFDKE RHEDSMKSSN LLVNGSSSIE  540
DCLHATKMEV T
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C4e-70582125159MYB PROTO-ONCOGENE PROTEIN
1h89_C4e-70582125159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds 5'-AACGG-3' motifs in gene promoters (By similarity). Transcription repressor that regulates organ growth. Binds to the promoters of G2/M-specific genes and to E2F target genes to prevent their expression in post-mitotic cells and to restrict the time window of their expression in proliferating cells (PubMed:26069325). {ECO:0000250|UniProtKB:Q94FL9, ECO:0000269|PubMed:26069325}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00482DAPTransfer from AT5G02320Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by ethylene and salicylic acid (SA). {ECO:0000269|PubMed:16463103}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017608525.10.0PREDICTED: myb-related protein A-like
SwissprotQ6R0321e-172MB3R5_ARATH; Transcription factor MYB3R-5
TrEMBLA0A0B0MV060.0A0A0B0MV06_GOSAR; Myb-related 3R-1-like protein
STRINGGorai.006G172800.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16672887
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02320.21e-162myb domain protein 3r-5
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Kobayashi K, et al.
    Transcriptional repression by MYB3R proteins regulates plant organ growth.
    EMBO J., 2015. 34(15): p. 1992-2007
    [PMID:26069325]
  3. Chen P, et al.
    Arabidopsis R1R2R3-Myb proteins are essential for inhibiting cell division in response to DNA damage.
    Nat Commun, 2017. 8(1): p. 635
    [PMID:28935922]