PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_12005_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family RAV
Protein Properties Length: 350aa    MW: 39608.3 Da    PI: 8.5451
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_12005_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2262.3e-083881453
                         AP2  4 kGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkl 53
                                kG+    ++g W A+I+       + +r++lg+f +++eAa a++ a+  l
  Cotton_A_12005_BGI-A2_v1.0 38 KGIV-PQQNGHWGAQIYA------NhQRIWLGTFKSENEAALAYDSAAIGL 81
                                5553.445788****999......44********************99755 PP
2B384.11.3e-26151247184
                                 EEEE-..-HHHHTT-EE--HHH.HTT.............---.....--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHH CS
                          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.............ggkke...esktltledesgrsWevkliyrkksgryvltkGWke 67 
                                 f+k+ltpsdv+k++rlv+pkk+a +h                 +   e+++l+++d+s + W+++++y+k+s+++v+t+GW++
  Cotton_A_12005_BGI-A2_v1.0 151 FQKELTPSDVGKLNRLVIPKKHAVKHfphiendhqtftaA---NggcEDVELVFYDTSMKMWRFRYCYCKSSQSFVFTRGWNR 230
                                 99*************************9887655555551...0555899********************************* PP

                                 HHHHHT--TT-EEEEEE CS
                          B3  68 FvkangLkegDfvvFkl 84 
                                 Fvk+++Lke+D + F+ 
  Cotton_A_12005_BGI-A2_v1.0 231 FVKDKKLKEKDAIAFYT 247
                                 ***************93 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.26E-193593No hitNo description
PROSITE profilePS5103215.7783691IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-143693IPR001471AP2/ERF domain
SMARTSM003803.0E-163697IPR001471AP2/ERF domain
SuperFamilySSF541711.11E-123793IPR016177DNA-binding domain
Gene3DG3DSA:2.40.330.103.8E-31148251IPR015300DNA-binding pseudobarrel domain
CDDcd100172.89E-24150246No hitNo description
SuperFamilySSF1019366.8E-27150250IPR015300DNA-binding pseudobarrel domain
PfamPF023627.6E-24151247IPR003340B3 DNA binding domain
SMARTSM010191.1E-17151257IPR003340B3 DNA binding domain
PROSITE profilePS5086311.66151269IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MAATKTSRSG GGSGGDDYMF RASKRLKTET SGGLARFKGI VPQQNGHWGA QIYANHQRIW  60
LGTFKSENEA ALAYDSAAIG LRIGDPHRNF PLSYDNIQEP NFQNLHTTRD ILNMIKSGSY  120
QSKFADYTKS SANHNKNTIH NDTKFACQQL FQKELTPSDV GKLNRLVIPK KHAVKHFPHI  180
ENDHQTFTAA NGGCEDVELV FYDTSMKMWR FRYCYCKSSQ SFVFTRGWNR FVKDKKLKEK  240
DAIAFYTCEC TGEIEHGRGF FLIDVNYNGG DDENGGRIDV FKRLGSSSVL HHHQGELHVE  300
LELNLGTNIY CNLDEKHNEN CEDQGLSGLK SSSSHSMKEK RITLFGARIN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A1e-2814724510100DNA-binding protein RAV1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017624963.10.0PREDICTED: AP2/ERF and B3 domain-containing transcription factor At1g50680-like
SwissprotQ9C6P54e-95RAVL2_ARATH; AP2/ERF and B3 domain-containing transcription factor At1g50680
TrEMBLA0A0D2QXJ00.0A0A0D2QXJ0_GOSRA; Uncharacterized protein
STRINGGorai.004G018300.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2452634
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50680.12e-97RAV family protein