PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_11973_BGI-A2_v1.0
Common NameF383_03540, F383_09884
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family HB-other
Protein Properties Length: 517aa    MW: 57973.7 Da    PI: 9.5355
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_11973_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.83.7e-184297257
                                T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
                    Homeobox  2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57
                                +kRt  t+ q+ +Le+++++ r ps e+++++A ++gLte+q++ WF+ rR k+kk
  Cotton_A_11973_BGI-A2_v1.0 42 KKRTVKTPAQVMALEKFYKELRFPSDEMKAQIALQVGLTEKQISSWFCHRRLKDKK 97
                                8*****************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.3E-182898IPR009057Homeodomain-like
SuperFamilySSF466896.42E-163798IPR009057Homeodomain-like
PROSITE profilePS5007115.8563898IPR001356Homeobox domain
SMARTSM003892.9E-1440102IPR001356Homeobox domain
PfamPF000469.1E-164297IPR001356Homeobox domain
CDDcd000868.12E-164298No hitNo description
PROSITE patternPS0002707396IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 517 aa     Download sequence    Send to blast
MGPMHVDENC KSSLMGKMLA NSNFVKGEVQ TEENKVSLDV NKKRTVKTPA QVMALEKFYK  60
ELRFPSDEMK AQIALQVGLT EKQISSWFCH RRLKDKKRDE YVGRLDHSSG IIQDRGSGLW  120
QDSSGSIKER DYRNIDLREV ESGGISSQEF LATDHVYDRR NHQNPYDACM EDTSSESSSS  180
LQDMRFSENR GPYETKLGQN GTITQINPRT TKNTVFKPSG YLKLKGESEN PAILAVKRQL  240
GRYYIEDGPL LATDFDSLPN AAFEFPSSKV VSEPVDVGDH PQQPRSPRIS GAMKQPNPNV  300
VNEVHNSKTS SQDPYMENAT FKTVYGLERQ NKKSRHQLYK SHYNSFPGQN SSSDIHRSLA  360
ENAGTIDCKR SKVSSKLAVE RMRPDSFTNH PGPNVGKLVN EQEKTCLHDD DNRTYKAPKN  420
KIPSKTSNSK RGCIESPGAR MAKVEKLGGQ RKPKKEHPVG VKTDPTNESR VAKQVNVDFP  480
RPRSPLSMNP TKSYRPSMDV PSSFSEDETA DTSSSSG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
19098RRLKDKKRD
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017624154.10.0PREDICTED: uncharacterized protein LOC108467854 isoform X2
TrEMBLA0A0B0PZ940.0A0A0B0PZ94_GOSAR; Brain-specific homeobox
STRINGGorai.004G014700.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2823933
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G03250.14e-58HB-other family protein