PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_11893_BGI-A2_v1.0 | ||||||||
Common Name | F383_02795, F383_10022 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | GATA | ||||||||
Protein Properties | Length: 364aa MW: 39870.4 Da PI: 6.7255 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 55.1 | 1e-17 | 249 | 283 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C +C t kTp+WR gp g+ktLCnaCG++y++ +l Cotton_A_11893_BGI-A2_v1.0 249 CLHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRL 283 99*****************************9885 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF016992 | 2.1E-79 | 11 | 340 | IPR016679 | Transcription factor, GATA, plant |
SMART | SM00401 | 6.9E-17 | 243 | 293 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS50114 | 12.545 | 243 | 279 | IPR000679 | Zinc finger, GATA-type |
Gene3D | G3DSA:3.30.50.10 | 1.8E-14 | 244 | 280 | IPR013088 | Zinc finger, NHR/GATA-type |
SuperFamily | SSF57716 | 2.14E-15 | 245 | 307 | No hit | No description |
CDD | cd00202 | 2.08E-14 | 248 | 295 | No hit | No description |
PROSITE pattern | PS00344 | 0 | 249 | 274 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 1.4E-15 | 249 | 283 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 364 aa Download sequence Send to blast |
METPDFFQGT AYCSQLTPEK PAAGGDHFIV EDLLDFSNED AVITDVANFN SSVAGHSTDS 60 STVTAVESCN SSSFSGPETN LGGGIGCRSF TDGQFAGDLC VPYDDLAELE WLSNFAEESF 120 SSEDLQKLQL ISGMKTLPNV SSEPRGLQPE LPNQIENAID GGGGDNNHVF HPDMTVPAKA 180 RSKRSRAAPC NWASRLLVLS PTVSSPEPDI IVPVQPLPSN QPGKKPVKTT SSSSKKKDGG 240 ETSSDGRKCL HCATDKTPQW RTGPMGPKTL CNACGVRYKS GRLVPEYRPA ASPTFVLTKH 300 SNSHRKVLEL RRQKEMVRAQ QHHQQQFMHH HHHHHHHQNM VFDVSNGNDY LIHQPVGPDF 360 RQLI |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). Transcription activator involved in xylem formation. Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867). {ECO:0000250|UniProtKB:Q8LAU9, ECO:0000269|PubMed:25265867}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HQ524465 | 0.0 | HQ524465.1 Gossypium herbaceum clone NBRI_G035 simple sequence repeat marker, genomic sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017625306.1 | 0.0 | PREDICTED: GATA transcription factor 12-like | ||||
Swissprot | P69781 | 8e-91 | GAT12_ARATH; GATA transcription factor 12 | ||||
TrEMBL | A0A0B0NEF8 | 0.0 | A0A0B0NEF8_GOSAR; GATA transcription factor | ||||
STRING | Gorai.004G288400.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6625 | 26 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G25830.1 | 2e-80 | GATA transcription factor 12 |
Publications ? help Back to Top | |||
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