PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_11892_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C3H
Protein Properties Length: 361aa    MW: 40164.9 Da    PI: 7.1557
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_11892_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH26.79.3e-09125145526
                                 --SGGGGTS--TTTTT-SS-SS CS
                     zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                                  C++f++ G+Ck Gd+C FaHg
  Cotton_A_11892_BGI-A2_v1.0 125 ACPDFRK-GICKKGDSCEFAHG 145
                                 7******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501036.43772109IPR000571Zinc finger, CCCH-type
SMARTSM003564.3E-6120146IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.49E-5120149IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.479121147IPR000571Zinc finger, CCCH-type
PfamPF006429.4E-7125145IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.9E-5125147IPR000571Zinc finger, CCCH-type
SMARTSM0035613155178IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.615155179IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MMIGEPTRPN PTVKIPAWDP LNDPTSNYSS VNYNCIAPSS PCPVDYLSSL HRYLPSNDFE  60
SSDSLSEDSD LPVDAFSCDH FRMYEFKVRR CARGRSHDWT ECPYAHPGEK ARRRDPRKFH  120
YSGTACPDFR KGICKKGDSC EFAHGVFECW LHPARYRTQP CKDGTSCKRR VCFFAHTPEQ  180
LRLLPQQSPR GNGSSSGDLD YVGSPIRHRF DIVSSPTSIL ASPPLSPPSD SPPLSPSGSF  240
YSVSELAASM RSMQLGKSKM NGAGACSWGM QMGSGYGSPR GSTLRPGFCR SPSTPTRSGL  300
GQFDLWEYNN GFEEEPAMER VESGRDLRAR MYAKLSKENS LDGLDPTEPD PDLDWVSELV  360
K
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ5263180.0HQ526318.1 Gossypium herbaceum clone NBRI_D2_431 simple sequence repeat marker, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017626754.10.0PREDICTED: zinc finger CCCH domain-containing protein 23-like
SwissprotQ9M0G21e-118C3H49_ARATH; Zinc finger CCCH domain-containing protein 49
TrEMBLA0A2P5XG020.0A0A2P5XG02_GOSBA; Uncharacterized protein
STRINGGorai.004G288300.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12492788
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G19810.11e-117C3H family protein
Publications ? help Back to Top
  1. Dokládal L, et al.
    cDNA Library Screening Identifies Protein Interactors Potentially Involved in Non-Telomeric Roles of Arabidopsis Telomerase.
    Front Plant Sci, 2015. 6: p. 985
    [PMID:26617625]
  2. Min JH, et al.
    Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element.
    Front Plant Sci, 2017. 8: p. 2100
    [PMID:29321786]