PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_11761_BGI-A2_v1.0

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

G2-like

Protein Properties

Length: 76aa MW: 8772.34 Da PI: 10.7373

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_11761_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	88.7	5.5e-28	15	67	1	53
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkY 53 kprl+Wtp+LH+rFveav+q GG++kAt k+++++m++ gLtl+h+kSHLQ + Cotton_A_11761_BGI-A2_v1.0 15 KPRLKWTPQLHQRFVEAVNQVGGADKATLKSLMRIMGISGLTLYHLKSHLQAF 67 79*************************************************87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	8.8E-27	13	67	IPR009057	Homeodomain-like
SuperFamily	SSF46689	3.52E-15	14	69	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	4.1E-19	15	68	IPR006447	Myb domain, plants
Pfam	PF00249	1.8E-6	17	65	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 76 aa Download sequence Send to blast
MGHQNMNLVL STDTKPRLKW TPQLHQRFVE AVNQVGGADK ATLKSLMRIM GISGLTLYHL 60 KSHLQAFYHF FFCVIR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	9e-20	15	67	2	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	9e-20	15	67	2	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	8e-20	15	67	1	53	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	8e-20	15	67	1	53	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	8e-20	15	67	1	53	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	8e-20	15	67	1	53	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	9e-20	15	67	2	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	9e-20	15	67	2	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	9e-20	15	67	2	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	9e-20	15	67	2	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	9e-20	15	67	2	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	9e-20	15	67	2	54	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that may activate the transcription of specific genes involved in nitrogen uptake or assimilation (PubMed:15592750). Acts redundantly with MYR1 as a repressor of flowering and organ elongation under decreased light intensity (PubMed:21255164). Represses gibberellic acid (GA)-dependent responses and affects levels of bioactive GA (PubMed:21255164). {ECO:0000269\|PubMed:21255164, ECO:0000305\|PubMed:15592750}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by nitrogen deficiency. {ECO:0000269\|PubMed:15592750}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX614276	3e-52	JX614276.1 Gossypium hirsutum clone NBRI_GE57551 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016679091.1	3e-42	PREDICTED: uncharacterized protein LOC107898046
Swissprot	Q9SQQ9	5e-28	PHL9_ARATH; Myb-related protein 2
TrEMBL	A0A2P5PZ98	4e-46	A0A2P5PZ98_GOSBA; Uncharacterized protein
STRING	Gorai.012G187000.1	2e-37	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM363	28	184

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04030.1	1e-30	G2-like family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Nakano Y,Naito Y,Nakano T,Ohtsuki N,Suzuki K NSR1/MYR2 is a negative regulator of ASN1 expression and its possible involvement in regulation of nitrogen reutilization in Arabidopsis. Plant Sci., 2017. 263: p. 219-225 [PMID:28818378]