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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Cotton_A_11720_BGI-A2_v1.0 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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| Family |
BBR-BPC |
| Protein Properties |
Length: 236aa MW: 26201.1 Da PI: 9.991 |
| Description |
BBR-BPC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Cotton_A_11720_BGI-A2_v1.0 | genome | BGI | View CDS |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GAGA_bind | 273.4 | 1.1e-83 | 3 | 236 | 48 | 301 |
GAGA_bind 48 ekkaavaerd.........maflqrdkalaernkalverdnkllalllvenslasalpvgvqvlsgtksidslqqlsepqled 121
+++ a++++d m++ rd+++a+ ++k++++ ++++ +++ vl +t + sl l++
Cotton_A_11720_BGI-A2_v1.0 3 TTNTAFHQQDpvvseahipMNY-VRDSWIAD--------REKIFSMFPATT-------PNYAVLLETPAAYSLPI-----LQP 64
4566666666666667788999.9999*999........678999999655.......45667777777776666.....777 PP
GAGA_bind 122 save.lreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesaderskaekksidlvlngvsl 203
++ +r+e+ a +e+++ +ke ++kkrq ++ pk ++akk+kk +k++ + + +k+ kksi + +ng ++
Cotton_A_11720_BGI-A2_v1.0 65 PPDSsTRDER--VASS-VEEPPANKEGVEPKKRQGGAAPKMPEAKKPKK----PKENANYTV--QCVKSAKKSIVFKINGYDM 138
7776334443..3333.356888888899999****************9....333334444..5689*************** PP
GAGA_bind 204 DestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLk 286
D+s++P+PvCsCtG+ +qCY+WG GGWqSaCCtt++S+yPLP+stkrrgaRiagrKmSqgafkk+LekLaae y++s p+DL+
Cotton_A_11720_BGI-A2_v1.0 139 DISGIPIPVCSCTGTAQQCYRWGFGGWQSACCTTNVSMYPLPMSTKRRGARIAGRKMSQGAFKKVLEKLAAENYNFSSPIDLR 221
*********************************************************************************** PP
GAGA_bind 287 dhWAkHGtnkfvtir 301
+hWA+HGtnkfvtir
Cotton_A_11720_BGI-A2_v1.0 222 SHWARHGTNKFVTIR 236
**************8 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 236 aa
Download sequence Send
to blast |
MVTTNTAFHQ QDPVVSEAHI PMNYVRDSWI ADREKIFSMF PATTPNYAVL LETPAAYSLP 60
ILQPPPDSST RDERVASSVE EPPANKEGVE PKKRQGGAAP KMPEAKKPKK PKENANYTVQ 120
CVKSAKKSIV FKINGYDMDI SGIPIPVCSC TGTAQQCYRW GFGGWQSACC TTNVSMYPLP 180
MSTKRRGARI AGRKMSQGAF KKVLEKLAAE NYNFSSPIDL RSHWARHGTN KFVTIR
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| Functional Description ? help
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| Source |
Description |
| UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. Negatively regulates the homeotic gene AGL11/STK, which controls ovule primordium identity, by a cooperative binding to purine-rich elements present in the regulatory sequence leading to DNA conformational changes. {ECO:0000269|PubMed:14731261, ECO:0000269|PubMed:15722463}. |
