PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_11627_BGI-A2_v1.0
Common NameF383_16109
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family HSF
Protein Properties Length: 313aa    MW: 34890.8 Da    PI: 4.9429
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_11627_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind115.24e-36291202102
                                 HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEES CS
                HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhk 84 
                                 Fl+k+y++++++++++lisw+++g++f+v+ + efa+++LpkyFkh+nf+SFvRQLn+YgF+kv  ++         weF+++
  Cotton_A_11627_BGI-A2_v1.0  29 FLSKTYQLVDNPSVDDLISWNDDGSTFIVWRPAEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVVPDR---------WEFAND 102
                                 9*****************************************************************99.........****** PP

                                 XXXXXXXXXXXXXXXXXX CS
                HSF_DNA-bind  85 sFkkgkkellekikrkks 102
                                  Fk+g+k ll++i+r+k 
  Cotton_A_11627_BGI-A2_v1.0 103 CFKRGEKGLLRDIQRRKI 120
                                 ***************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004153.2E-5825118IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.107.9E-3826118IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467852.45E-3526118IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000563.4E-202952IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004479.8E-3229118IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.4E-206779IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406892IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.4E-208092IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MAPLPADQPC ESHASGAVAD SQRSLPTPFL SKTYQLVDNP SVDDLISWND DGSTFIVWRP  60
AEFARDLLPK YFKHNNFSSF VRQLNTYGFR KVVPDRWEFA NDCFKRGEKG LLRDIQRRKI  120
THNASGSATV TIAAVTCKPS PSNSSDEQVI SSNSPPVATV LNRTTSCTTT AELLEENERL  180
RKENMQLNHE LTQLKRLCNN ILNLMTNYAS GQVENHSNLA EGKALDLLPA RTRNGGGSKP  240
VLAETEEEAA EDLRPKLFGV SIGMKRVRRE GEEEEGVMDE EQQQEIKPGS DIKSEPLDGN  300
NDNQDSTWLE LGK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A1e-252911820120Heat shock factor protein 1
5d5u_B1e-252911829129Heat shock factor protein 1
5d5v_B1e-252911829129Heat shock factor protein 1
5d5v_D1e-252911829129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7024480.0KJ702448.1 Gossypium hirsutum heat shock transcription factor (HSF6) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017642870.10.0PREDICTED: heat stress transcription factor B-2b
SwissprotQ9T0D31e-104HFB2B_ARATH; Heat stress transcription factor B-2b
TrEMBLA0A0B0NFP90.0A0A0B0NFP9_GOSAR; Heat stress transcription factor B-2b-like protein
STRINGGorai.003G160600.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM96528111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11660.14e-87HSF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]