PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_11532_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB
Protein Properties Length: 576aa    MW: 65899.2 Da    PI: 6.584
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_11532_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.42.9e-17255301148
                                 TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
             Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                 +g WT++Ed  l ++v+++G++ W+ Ia++++ gR +kqc++rw+++l
  Cotton_A_11532_BGI-A2_v1.0 255 KGQWTPQEDRVLMQLVTRHGTKKWSQIAKMLN-GRVGKQCRERWHNHL 301
                                 799*****************************.*************97 PP
2Myb_DNA-binding537.7e-17378420145
                                 TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
             Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                                 +++W++eEd +l+ a+k+ G++ W+ Ia++++ gRt++ +k++w+
  Cotton_A_11532_BGI-A2_v1.0 378 KDSWSEEEDMILIAAHKEIGNK-WAEIAKRLP-GRTENTIKNHWN 420
                                 679*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.5E-24248306IPR009057Homeodomain-like
PROSITE profilePS5129428.544250305IPR017930Myb domain
SuperFamilySSF466892.93E-28252302IPR009057Homeodomain-like
SMARTSM007171.3E-14254303IPR001005SANT/Myb domain
PfamPF002493.3E-16255301IPR001005SANT/Myb domain
CDDcd001672.35E-13258301No hitNo description
PROSITE profilePS5129419.057370427IPR017930Myb domain
SMARTSM007179.9E-16377425IPR001005SANT/Myb domain
PfamPF002493.2E-15378420IPR001005SANT/Myb domain
SuperFamilySSF466892.93E-28379419IPR009057Homeodomain-like
CDDcd001672.33E-12380423No hitNo description
Gene3DG3DSA:1.10.10.601.7E-18380421IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 576 aa     Download sequence    Send to blast
MEYDTSFKED FPFLSSLFSE NNSNSSFKPD FNACFPLPDG SSPSSSSSPS SSSSKALVHN  60
FILNQDQDTT PTGNNNNGSF LNNHPHHFHQ FPIDGSSKNP FFEDSTTCTD PFIDPYTNDL  120
NAYIPSLSFT VPDHGTSLNN GLTFQAFSTE SPCWDFSQNK ASAPPEAGDH HRSYQQQQQE  180
LMDFQDQPPT PPPPPPPVAT KVAEDASCIT NQNGRNNNNQ DRDDDDDDDE KNNNNRRFLK  240
AKRVNQATKK TSIIKGQWTP QEDRVLMQLV TRHGTKKWSQ IAKMLNGRVG KQCRERWHNH  300
LRPDIKVLLD FLFLFFFYFS LTHHTHKHRY TCMIMYVCVY ISLLYIYISY VRMYIYVMDK  360
RLHLTYIFLI QKIRYMYKDS WSEEEDMILI AAHKEIGNKW AEIAKRLPGR TENTIKNHWN  420
ATKRRQFTRR SKAKDGNSNP PKGSLLQNYI KSVSSPTELT PAAAASSSSQ HENEFEMTDA  480
NPHMVQLETS SLNSTGWSIG ALNDHVQRQR QQQQEVNYCF DANVYNDIHR NQSFGSMLEG  540
DGNGNGSGMG NFELPLEMDS LKKELDLLEM ISQGNL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-182534265107B-MYB
1gvd_A1e-18253304152MYB PROTO-ONCOGENE PROTEIN
1mse_C3e-182534262104C-Myb DNA-Binding Domain
1msf_C3e-182534262104C-Myb DNA-Binding Domain
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6154680.0JX615468.1 Gossypium hirsutum clone NBRI_GE59465 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017644915.11e-172PREDICTED: myb-like protein AA
TrEMBLA0A1U8LH931e-161A0A1U8LH93_GOSHI; myb-like protein AA
STRINGGorai.001G263600.11e-159(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM60522643
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G27785.14e-30myb domain protein 118