PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_11495_BGI-A2_v1.0

Common Name

F383_03824

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

C2H2

Protein Properties

Length: 357aa MW: 39718.5 Da PI: 9.9196

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_11495_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.4	0.00048	149	162	1	14
EEETTTTEEESSHH CS zf-C2H2 1 ykCpdCgksFsrks 14 +kC++C+ksFs+k+ Cotton_A_11495_BGI-A2_v1.0 149 FKCKKCNKSFSSKD 162 89*********987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF53335	2.28E-28	195	352	IPR029063	S-adenosyl-L-methionine-dependent methyltransferase
Gene3D	G3DSA:3.40.50.150	2.9E-28	217	352	IPR029063	S-adenosyl-L-methionine-dependent methyltransferase
CDD	cd02440	9.92E-12	230	332	No hit	No description
Pfam	PF08241	4.0E-20	232	332	IPR013216	Methyltransferase type 11

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0032259	Biological Process	methylation
GO:0008168	Molecular Function	methyltransferase activity

Sequence ? help Back to Top
Protein Sequence Length: 357 aa Download sequence Send to blast
MVADVSAANS IGILNTNRRA YYIALPKPPK FRINHISREA VSQPFHFPFS LMAIAPPSLR 60 PLHKSLFPKY PSFSHDSPFR PSLHFSSKPF RLTVRASSAV ALEQDLRTQG TQQNQTVETE 120 LFSCPVCYEP LIRKGPLGLN LDAIYRSGFK CKKCNKSFSS KDVFLDLTVT AGLRNYTEVK 180 PVRTELFRSP LVSFLYERGW RQNFNLSGFP GADEEFRMAQ EYFKPAEGGT LVDVSCGSGL 240 FSRKFAQSGT YSGVIALDFS ENMLRQCNDF IKQDASLLAS NIALVRADVS RLPFSSGSID 300 AVHAGAALHC WPSPSNAIAE ISRILRSGGV FVGSTFLRYT SSTPWIIRPF REGYAKL

Sequence ? help Back to Top

Protein Sequence Length: 357 aa Download sequence Send to blast

MVADVSAANS IGILNTNRRA YYIALPKPPK FRINHISREA VSQPFHFPFS LMAIAPPSLR  60
PLHKSLFPKY PSFSHDSPFR PSLHFSSKPF RLTVRASSAV ALEQDLRTQG TQQNQTVETE  120
LFSCPVCYEP LIRKGPLGLN LDAIYRSGFK CKKCNKSFSS KDVFLDLTVT AGLRNYTEVK  180
PVRTELFRSP LVSFLYERGW RQNFNLSGFP GADEEFRMAQ EYFKPAEGGT LVDVSCGSGL  240
FSRKFAQSGT YSGVIALDFS ENMLRQCNDF IKQDASLLAS NIALVRADVS RLPFSSGSID  300
AVHAGAALHC WPSPSNAIAE ISRILRSGGV FVGSTFLRYT SSTPWIIRPF REGYAKL

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017605039.1	0.0	PREDICTED: uncharacterized methyltransferase At2g41040, chloroplastic-like
Swissprot	Q0WPT7	1e-143	Y2104_ARATH; Uncharacterized methyltransferase At2g41040, chloroplastic
TrEMBL	A0A0B0P8J5	0.0	A0A0B0P8J5_GOSAR; Uncharacterized protein
STRING	Gorai.009G013400.1	0.0	(Gossypium raimondii)

Publications ? help Back to Top
Vidi PA, et al. Tocopherol cyclase (VTE1) localization and vitamin E accumulation in chloroplast plastoglobule lipoprotein particles. J. Biol. Chem., 2006. 281(16): p. 11225-34 [PMID:16414959] Ytterberg AJ,Peltier JB,van Wijk KJ Protein profiling of plastoglobules in chloroplasts and chromoplasts. A surprising site for differential accumulation of metabolic enzymes. Plant Physiol., 2006. 140(3): p. 984-97 [PMID:16461379] Lundquist PK, et al. The functional network of the Arabidopsis plastoglobule proteome based on quantitative proteomics and genome-wide coexpression analysis. Plant Physiol., 2012. 158(3): p. 1172-92 [PMID:22274653]