PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Cotton_A_11336_BGI-A2_v1.0 | ||||||||
Common Name | F383_11564 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
|
||||||||
Family | Dof | ||||||||
Protein Properties | Length: 346aa MW: 37885.2 Da PI: 7.6905 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 125 | 2.4e-39 | 45 | 105 | 2 | 62 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +++ lkcprCds+ntkfCyynnyslsqPr+fCkaC+ryWt+GG+lrnvPvGgg+rknk+++ Cotton_A_11336_BGI-A2_v1.0 45 QQQVLKCPRCDSSNTKFCYYNNYSLSQPRHFCKACKRYWTRGGTLRNVPVGGGCRKNKRVK 105 68999*****************************************************976 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF02701 | 7.5E-34 | 47 | 103 | IPR003851 | Zinc finger, Dof-type |
ProDom | PD007478 | 3.0E-27 | 48 | 103 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 29.525 | 49 | 103 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 51 | 87 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 346 aa Download sequence Send to blast |
MLSNCEKMII SSTANQWPQN HIDEKDLMAS TARLMEKPSH EQQQQQQVLK CPRCDSSNTK 60 FCYYNNYSLS QPRHFCKACK RYWTRGGTLR NVPVGGGCRK NKRVKRPAAS ATDGASPTSG 120 ANIANTPSQP QMDVSSTSSH HINPLFYGLA NNPSDINLPF PRFSSRVLGA ETVTGYDLQP 180 DVNALGLGFS SGIVSSDTGD GDYRNGFNTN PTKQIQDVVT SNPLLPCYSN IFGSSSTTTA 240 PTIASLLAST LYQHKFMNGG VKNTQLPNQL QALSPFQDLQ MTGNGENGVT MKDIKVEEAQ 300 SRMDWNVQCQ NQLDQMGLSD PTVYWSTTSV GAWNDPANFE SSVSLI |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | EU532295 | 2e-50 | EU532295.1 Gossypium barbadense clone I10-23 ISSR marker genomic sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_017603460.1 | 0.0 | PREDICTED: dof zinc finger protein DOF1.4-like | ||||
TrEMBL | A0A0B0M5Z5 | 0.0 | A0A0B0M5Z5_GOSAR; Dof zinc finger DOF1.4-like protein | ||||
STRING | Gorai.009G168300.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4709 | 26 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G28310.1 | 2e-50 | Dof family protein |