PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_11329_BGI-A2_v1.0
Common NameF383_04525
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C3H
Protein Properties Length: 763aa    MW: 84577.9 Da    PI: 6.876
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_11329_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.71.7e-07240259525
                                 --SGGGGTS--TTTTT-SS-S CS
                     zf-CCCH   5 lCrffartGtCkyGdrCkFaH 25 
                                 +C+ffar G+C  G++CkF+H
  Cotton_A_11329_BGI-A2_v1.0 240 ICDFFAR-GWCVKGSSCKFIH 259
                                 6******.************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.0089235261IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.929235262IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.66E-6235259IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.5E-4240259IPR000571Zinc finger, CCCH-type
PfamPF006429.5E-5240259IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 763 aa     Download sequence    Send to blast
MPLSTPAAVP RADKDDERRT ALTTKPEFNS SDMEIDDDDE EERGQELQVS SKRNDPLSAP  60
GRSEMRIPSK TLYVGESSAS FNLCSLPDEP WATQREDLCK NYNGSKYPIS GKWPANEKAI  120
QEYGVNGQDA RVIFERKAHE DHHEQHTRSK VNEIMYEATN LISVDGKEIA INDVISILGR  180
YHSGVGVSSH GFEQKSEQMG MQTENNKRSI KSRSSAPQTS TGSLYPGAEF NSENKRPALI  240
CDFFARGWCV KGSSCKFIHI KDSGTNPRQQ SEEDAAVADE KIAVQLDEGI QNTAEKSRPH  300
SPGSSDRLPS SARNGTALSP LIHSKDKSIG TSLGSQQFQA STDDSEPSKD VRQPSIGQSL  360
PADNYVKPGL LSDRGSSTFR NGFLPKHIPY LSGSVTSLGN TYKENQKYRV STWLASLPFS  420
YSSSACSVDA QKMLKNDREH HTSHPSSLLQ GSSPFSGFEP ENFPATDIAK DPLHFTEYRI  480
KISSDDWEPS VPFRPSFFIT FGSSSPRRQY DPLRDSIDLS NVGERSLKFS FSSQGPSLLD  540
VAYPPTYDDS TSAGPLVPAC NADKIIASCH GRYVENLVNN NYHTSGKDST TDANDGTSAA  600
DMQNGTLVKE EISSVASHVK DISKTSKTDT DRDARHRRDG FRCKKDLKVD RVREKNEIDI  660
EHKADGEALK ESKAMRHFHA ALVDLIKELL KPTWREGHLS KDAHNRIVKK AVNKVIGTMQ  720
PHQIPLTFES VKQYLSASQS KIARLVQVSV FDLRVVMVYT SMI
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017606540.10.0PREDICTED: protein FRIGIDA-ESSENTIAL 1
RefseqXP_017606541.10.0PREDICTED: protein FRIGIDA-ESSENTIAL 1
TrEMBLA0A0B0NI850.0A0A0B0NI85_GOSAR; Zinc finger CCCH domain-containing 27-like protein
STRINGGorai.009G167600.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM156171016
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33835.12e-46C3H family protein