PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_11313_BGI-A2_v1.0
Common NameF383_05648
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family NAC
Protein Properties Length: 321aa    MW: 36105.8 Da    PI: 9.5137
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_11313_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM105.37.6e-33682081128
                         NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......lelee....vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgk 72 
                                 lp+G++F+Ptd+e++ e+L++kv ++       l   +    +++   +i++++P++Lp  v+++ +  +fF++ +k+y+tg+
  Cotton_A_11313_BGI-A2_v1.0  68 LPAGVKFDPTDQEIL-EHLEAKVISDLrklhplL---DefipTLEGEnGICYTHPEKLP-GVSKDGQIRHFFHRPSKAYTTGT 145
                                 799***********9.899999876664664432...222222333336**********.555666777************** PP

                         NAM  73 rknratk......sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                                 rk+r+++      + +W++tgk+++v + +g+++g kk+Lv+y   gr++k+ekt+Wvmh+y+l
  Cotton_A_11313_BGI-A2_v1.0 146 RKRRKVHtdeegsETRWHKTGKTRAVSV-GGAVKGFKKILVLYtnYGRQRKPEKTNWVMHQYHL 208
                                 ****744446555778***********9.9*************66589**************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.31E-3763227IPR003441NAC domain
PROSITE profilePS5100533.87468227IPR003441NAC domain
PfamPF023652.3E-1569208IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MTWCNNPDDD ARAIKLVATA TKEPSLAVAA TSAASYTKIH EIQTIICPSC GFNIPYQDQT  60
GIHDLPGLPA GVKFDPTDQE ILEHLEAKVI SDLRKLHPLL DEFIPTLEGE NGICYTHPEK  120
LPGVSKDGQI RHFFHRPSKA YTTGTRKRRK VHTDEEGSET RWHKTGKTRA VSVGGAVKGF  180
KKILVLYTNY GRQRKPEKTN WVMHQYHLGN NEEEKDGELV ISKVFYQTQP RQCGPSSVKY  240
TLDRKLKTRS RLHQNPNPMA KSSGSRGLVE YNNPPFIPYD DGSHHNRESP PQLIPNLVVQ  300
GDGSSFIRLT SDTSKGRVER K
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that plays a regulatory role in the development of secondary cell wall fibers. Is a direct target of SND1. {ECO:0000269|PubMed:18952777}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00165DAPTransfer from AT1G28470Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC8472040.0KC847204.1 Gossypium hirsutum NAC domain protein NAC27 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017603229.10.0PREDICTED: NAC domain-containing protein 73-like
SwissprotF4HY611e-117NAC10_ARATH; NAC domain-containing protein 10
TrEMBLA0A0B0PIN90.0A0A0B0PIN9_GOSAR; NAC domain-containing 8-like protein
STRINGGorai.009G166300.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20122881
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28470.11e-120NAC domain containing protein 10