PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_11268_BGI-A2_v1.0

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

G2-like

Protein Properties

Length: 382aa MW: 43479.8 Da PI: 8.49

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_11268_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	101.6	5e-32	87	140	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtp+LH +Fv+ave+LGG+++AtPk +l+lm+vkgL+++hvkSHLQ+YR+ Cotton_A_11268_BGI-A2_v1.0 87 PRLRWTPDLHLSFVHAVERLGGQDRATPKLVLQLMNVKGLSIAHVKSHLQMYRS 140 8****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	13.115	83	143	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	8.4E-30	83	141	IPR009057	Homeodomain-like
SuperFamily	SSF46689	8.06E-15	86	141	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.2E-22	87	142	IPR006447	Myb domain, plants
Pfam	PF00249	9.4E-9	88	139	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 382 aa Download sequence Send to blast
MMEMHGEEKR VNSEVCSHKC TNFDLNEEAS CQDNDYVGKE GEVSVEEEEI EKRSTEEGSS 60 SNNNGGEEGG INDRRRTVRQ YVRSKLPRLR WTPDLHLSFV HAVERLGGQD RATPKLVLQL 120 MNVKGLSIAH VKSHLQMYRS KKLDESGQVL SKSNRSIKGR DEIRRMSLQR AAAVSSSPHQ 180 RLRMENGGIV LAAESLENDI TLTRFRSPLY QRSLEFKPGF PRHHLEPNSL ISKAGGEKNG 240 FPKTGGLLSN EGQSNQIHGM EMRIGGMRRG WVLEEKRWQM ICNRWEVERE MSKHTFIGGH 300 YSTSSTQGNN TSTVGQFVSD NLSKFTSEFD APFLVELNQD KVMDREWLPD LQLRLSQRIG 360 IEDKKNTHCK GTHEINTRLS LS

Sequence ? help Back to Top

Protein Sequence Length: 382 aa Download sequence Send to blast

MMEMHGEEKR VNSEVCSHKC TNFDLNEEAS CQDNDYVGKE GEVSVEEEEI EKRSTEEGSS  60
SNNNGGEEGG INDRRRTVRQ YVRSKLPRLR WTPDLHLSFV HAVERLGGQD RATPKLVLQL  120
MNVKGLSIAH VKSHLQMYRS KKLDESGQVL SKSNRSIKGR DEIRRMSLQR AAAVSSSPHQ  180
RLRMENGGIV LAAESLENDI TLTRFRSPLY QRSLEFKPGF PRHHLEPNSL ISKAGGEKNG  240
FPKTGGLLSN EGQSNQIHGM EMRIGGMRRG WVLEEKRWQM ICNRWEVERE MSKHTFIGGH  300
YSTSSTQGNN TSTVGQFVSD NLSKFTSEFD APFLVELNQD KVMDREWLPD LQLRLSQRIG  360
IEDKKNTHCK GTHEINTRLS LS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	7e-17	88	142	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	7e-17	88	142	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	7e-17	88	142	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	7e-17	88	142	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017605929.1	0.0	PREDICTED: uncharacterized protein LOC108452637
TrEMBL	A0A1U8PM69	0.0	A0A1U8PM69_GOSHI; uncharacterized protein LOC107960428
STRING	Gorai.009G161800.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM363	28	184

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38300.1	9e-38	G2-like family protein