PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_11053_BGI-A2_v1.0

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

Dof

Protein Properties

Length: 251aa MW: 27894 Da PI: 8.4661

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_11053_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	128.4	2.1e-40	25	86	2	63
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63 +e+alkcprCds ntkfCyynnyslsqPryfCk+CrryWtkGG+lrnvPvGgg+rknk+sss Cotton_A_11053_BGI-A2_v1.0 25 HEQALKCPRCDSINTKFCYYNNYSLSQPRYFCKSCRRYWTKGGTLRNVPVGGGCRKNKRSSS 86 7899******************************************************9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	5.0E-28	13	78	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.5E-34	27	83	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.469	29	83	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	31	67	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 251 aa Download sequence Send to blast
MANPSMENMS VNSKGQQERK PRPQHEQALK CPRCDSINTK FCYYNNYSLS QPRYFCKSCR 60 RYWTKGGTLR NVPVGGGCRK NKRSSSSSSS SKRSQDQPLL TSNSTNPLIS GHLPPLNYDT 120 NDLSLAFARL QKQSGFPLGF DDFGNPSLNG CTSSTSPPNL AIVDALRSSF LGNQNNLQNF 180 YYGFGNENMG EVEDMGFNGE LMVPYHNEEM SNASTVTTMK QELSIADFDS GRGTWNGFNS 240 SWHGLLNSPL M

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF351547	0.0	AF351547.1 Gossypium hirsutum clone JESPR310 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017603675.1	0.0	PREDICTED: dof zinc finger protein DOF2.1-like
TrEMBL	A0A1U8PHQ8	1e-171	A0A1U8PHQ8_GOSHI; dof zinc finger protein DOF2.1
STRING	Gorai.009G079400.1	1e-169	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6960	27	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28510.1	9e-38	Dof family protein