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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
Cotton_A_11031_BGI-A2_v1.0 |
| Common Name | F383_08613 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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| Family |
NF-YC |
| Protein Properties |
Length: 276aa MW: 30783.4 Da PI: 5.0693 |
| Description |
NF-YC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Cotton_A_11031_BGI-A2_v1.0 | genome | BGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NF-YC | 59.1 | 9.7e-19 | 6 | 86 | 18 | 98 |
NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98
++++P arikki++aded+ +i+ +P l+ska elf+ +l r++ + + +t++ s ++++v+ ++fdfl +iv +
Cotton_A_11031_BGI-A2_v1.0 6 DTRFPAARIKKIMQADEDIGKIAMAVPLLVSKALELFLQDLCDRTYEITTMKGAKTINSSHLKQCVQGFNVFDFLREIVGK 86
5789************************************************************************99865 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 276 aa
Download sequence Send
to blast |
MKRKLDTRFP AARIKKIMQA DEDIGKIAMA VPLLVSKALE LFLQDLCDRT YEITTMKGAK 60
TINSSHLKQC VQGFNVFDFL REIVGKVPDL GGLDAAAEDC HVPKKRKVAD DDESKKSRMH 120
ESCHVTSSSR GRGRGRGRGQ GRGRQTAGRE TAAHCGKFED DLDISYFEEK HDLSLERHVP 180
DDVVESDESK KHNHAGKNIK TPVRNIDLNA DLDENGDLIT SIAAASPRTD DMPENSENRE 240
EYPGWSLCEI EKMAIDPIKL ADSNGGIDDE DYDEEV
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| Nucleic Localization
Signal ? help
Back to Top |
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| No. |
Start |
End |
Sequence |
| 1 | 133 | 142 | RGRGRGQGRG |
